Elizabeth Zakszewski1, Alexander Cohen1, Oiwi Parker Jones2, Saad Jbabdi2, and Yang Wang1
1Medical College of Wisconsin, Milwaukee, WI, United States, 2Oxford Centre for Functional Magnetic Resonance Imaging of the Brain (FMRIB), University of Oxford, Oxford, United Kingdom
Synopsis
This
study is aimed to apply a newly developed machine learning approach to predict
individual language network based on the resting state functional MRI (rs-fMRI).
Despite the presence of significant variability of language network across
subjects, the predicated language maps match excellently with the language task
fMRI derived activation maps at the individual level. Our results suggest that rs-fMRI
can be used as a promising clinical tool for mapping language network by using
the novel processing approach.
Introduction
Functional MR (fMRI)
imaging has been applied for preoperative mapping of eloquent brain regions
related with important brain functions such as motor and language. Although
task fMRI is successfully used in routine clinical care for operative
management, resting state fMRI (rs-fMRI) has been investigated as an attractive
alternative to task fMRI, specifically in patients who may be neurologically
debilitated because of the presence of large brain lesions and may be unable to
comply with a given task. However, only moderate group level rs-fMRI vs task
fMRI language network concordance can be achieved by using existing methods.1-3
Most recently, a novel model based on machine learning (ML) has been proposed
to accurately predict individual differences in brain activity.4 The method
highlights a coupling between brain connectivity and function that can be
captured at the level of individual subjects.4,5 Here, we take an in-depth
look at the similarities between language task activations and activation maps
predicted with the ML method.Methods
Total 30 healthy right-handed
volunteers were scanned on a 3T MR scanner. For each subject, rs-fMRI was
acquired using these parameters: TR/TE=2500/30ms, FA=90, voxel size=3.75x3.75x3mm3.
The same subjects also performed a word generation task during a task fMRI
acquisition using the same parameters as the rs-fMRI. Predictions of all
subjects’ activation maps were made from rs-fMRI data using the methods of Parker
Jones, et al.5 Briefly, all rs-fMRI data was preprocessed using the Human
Connectome Project (HCP) minimal preprocessing pipeline6 and converted to
the CIFTI format. Features were
extracted from the combined rs-fMRI data using dual-step principle component
analysis (PCA) followed by independent component analysis (ICA) to create a set
of 70 group-level feature maps. These were combined with individual subjects’
rs-fMRI data to create a feature map for each subject. A ML algorithm was then
trained to map from individual feature maps (predictors) to task activations.
The beta coefficients were averaged with a leave-one-out analysis (leaving out
that subject’s beta, creating a model that has not “seen” that subject) for
each subject to create a predicted task activation map. This predicted
activation map, the task-based activation map, and a map of the overlap between
the two were viewed in the Connectome Workbench application. Additionally, individual language task
activation maps were derived from a general linear model analysis on all task
fMRI datasets.Results
Overall, predicated
activation maps generated from rs-fMRI data otline language networks in all
subjects. The correspondence between predicted language maps and task
activation maps match very well at the individual level (Fig1). Four example subjects are
shown in Figure 2. In all cases, significant overlap (green) between task and
predicted activation maps is seen in the left inferior frontal gyrus and
superior temporal gyrus. Lateralization is seen in that more activation occurs
in the left hemisphere (left) with less or none in the right hemisphere (right).Discussion and Conclusion
Despite the presence of
significant variability of language network across subjects, the novel ML
method of estimating language task activation based on rs-fMRI data is
successful at predicting language areas at the individual level. Specifically, when
thresholding to eliminate all but the strongest activations, the predicted maps
provide an excellent match with the language task maps. Importantly, our
results indicate clear language lateralization, as is expected for right-handed
subjects. Our finding suggests that rs-fMRI can be used as a promising tool to
provide important information on language network for neurosurgical planning
and prognosis, particularly in pediatric population or those patients with
issue of compliance.Acknowledgements
This work was supported by a Daniel M.
Soref Charitable Trust Grant (to Y.W.).References
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