Ning Lang1, Yang Zhang2, Enlong Zhang1, Jiahui Zhang1, Daniel Chow2, Peter Chang3, Melissa Khy2, Hon J. Yu2, Huishu Yuan1, and Min-Ying Su2
1Department of Radiology, Peking University Third Hospital, Beijing, China, 2Department of Radiological Sciences, University of California, Irvine, CA, United States, 3Department of Radiology, University of California, San Francisco, CA, United States
Synopsis
DCE-MRI
of the spine was analyzed to differentiate metastasis from lung cancer (N=30)
and other tumors (N=31, 9 breast, 6 prostate, 7 thyroid, 6 liver, 3 kidney). Using
DCE parameters measured from the tumor ROI, CHAID decision tree classification
selected the wash-out slope of -6.6% and wash-in SE of 98% as thresholds, which
could achieve diagnostic accuracy of 0.79. In machine learning, the enhanced
tumor on DCE image was segmented automatically by using the normalized cut
algorithm. The Convolutional
Long Short Term Memory (CLSTM) network with all 12 sets of DCE images as the input
could yield accuracy of 0.75-0.84.
Introduction:
Patients
presenting with pain in the spine are suspected to have lesions compressing the
spinal cord, and often recommended to receive MRI for diagnosis. For patients
who do not have a known disease, a correct diagnosis will be very helpful for
guiding subsequent workup procedures. The most common malignancy in the spine
is metastatic cancer [1-2]. For patients who have been diagnosed with cancer
before, spinal pain could be a sign of metastasis. For patients without known
cancer, if the origin of cancer in the spine can be accurately predicted, it
will help narrow the search and decide the most appropriate imaging
examinations to find the primary cancer without the need of performing the
challenging spinal biopsy. Among all patients with unknown primary in our
institute, lung cancer is the most common, and thus the purpose of this study
is to differentiate lung metastasis from other tumors in the spine. It has been
shown that DCE-MRI may provide additional information to further characterize
the detected lesion [3-4]. In this study, firstly the DCE parameters analyzed
from manually-placed ROI were used for diagnosis, and secondly machine learning
using the entire DCE imaging sequence was performed to investigate whether this
provides an efficient method to thoroughly analyze all imaging features for a
correct diagnosis.Methods:
In
a retrospective review of spinal MRI that included a DCE sequence, a total of
61 patients with confirmed osseous spinal metastases originating from a known
primary tumor were identified. There were 30 patients with lung cancer (mean
age 56), 9 with breast cancer (mean age 54), 6 with prostate cancer (mean age
72), 7 with thyroid cancer (mean age 50), 6 with liver cancer (mean age 52),
and 3 with kidney cancer (mean age 65). MR scans were performed on a 3T Siemens or GE
scanner with a consistent protocol. After the abnormal region was identified on
Sagittal view, DCE-MRI was performed using the 3D VIBE sequence on the Axial
view, with a total of 12 time frames and a temporal resolution of 12-16 seconds.
The contrast agent, 0.1 [mmol/kg] Gd-DTPA, was injected after one set of
pre-contrast images were acquired. For each case, a region of interest (ROI)
was manually placed on an area that showed the strongest enhancement, and the
signal intensity time course was measured. Figure
1 shows two case examples, one from lung the other from thyroid cancer. Three
heuristic parameters were measured: the maximum signal enhancement (SE) =
[(Smax-S0)/S0] x 100%; the steepest wash-in SE [(S2-S1)/S0] x 100% (S1 and S2
were two adjacent time points that showed the greatest signal enhancement); the
wash-out slope [(Slast-Speak)/Speak x 100%], or if no peak using the signal intensity
at 67 seconds as the reference [(Slast-S67s)/S67s x
100%]. The Chi-square Automatic Interaction Detector (CHAID) decision tree
classification method was applied to make diagnosis. The two compartmental
pharmacokinetic analysis was applied to obtain the in-flux transport constant Ktrans
and the out-flux rate constant kep ([1/min]). In addition, a convolutional long short term memory (CLSTM)
network was also applied for diagnosis. For analysis, tumor boundaries were
first segmented manually on sagittal T2W images and subsequently refined using a
normalized cut algorithm with region growing. Detailed methods are illustrated
in Figure 2. The resulting smallest bounding
box containing tumor was used as input into the CLSTM. Figure
3 shows the architecture, the convolutional long short term memory (CLSTM)
network [5-8]. Normalization
of DCE images was performed using a uniform scale[PC1] . To avoid overfitting, the dataset was augmented
by a random affine transformation. The algorithm was implemented with a
standard cross
entropy loss function and the Adam optimizer with an initial learning rate of 0.001
[6].
[PC1]What
does this mean? Scale each image so that the min/max intensity value is the
same?Results:
Table
1 summarizes
the 5 characteristic DCE parameters measured from the manually placed ROI. The
wash-out slope and kep showed a significance difference between lung cancer and
other tumors. The mean wash-out slope was 0.25% in lung cancer, indicating most
lung cancer showed a plateau DCE kinetic pattern. The mean wash-out slope was
-9.8% for other tumors, indicating that most of them showed the wash-out DCE
kinetic pattern. The breast (-12.9%) and thyroid (-15.6%) cancers had the most
prominent wash-out. The accuracy achieved by the CHAID decision tree
classification using washout slope followed by wash-in SE% was 0.79 (Figure 4). The accuracy achieved by the
CLSTM network on 10-fold cross-validation was 0.75-0.84, overall better than ROI-based
CHAID decision tree analysis.Conclusions:
Our
results show that the DCE kinetic measure of wash-out slope (kep) is the best
parameter to differentiate primary lung from non-pulmonary osseous spinal
metastatic disease. A CHAID decision tree using wash-out and wash-in derived
from a small tumor ROI can achieve an accuracy of 0.79. By comparison, a CLSTM using
the entire tumor as an input can achieve a higher accuracy of up to 0.84. These
DCE analysis methods may provide vascular information not only for diagnosis,
but also for predicting prognosis.Acknowledgements
This
study is supported in part by NIH R01 CA127927, the National Natural Science
Foundation of China (81701648, 81471634), and the Beijing Natural Science
Foundation (7164309).References
[1] Sciubba DM, Petteys RJ, Dekutoski MB, et al.
Diagnosis and management of metastatic spine disease. J Neurosurg Spine
2010;13(1):94–108.
[2] Molina CA, Gokaslan ZL, Sciubba DM. Diagnosis
and management of metastatic cervical spine tumors. Orthop Clin North Am.
2012;43(1):75-87.
[3] Khadem NR, Karimi S, Peck KK, et al.
Characterizing hypervascular and hypovascular metastases and normal bone marrow
of the spine using dynamic contrast-enhanced MR imaging. AJNR Am J Neuroradiol
2012; 33:2178–2185.
[4] Lang N, Yuan H, Yu HJ, Su MY. Diagnosis of
Spinal Lesions Using Heuristic and Pharmacokinetic Parameters Measured by Dynamic
Contrast-Enhanced MRI. Acad Radiol. 2017;24(7):867-875.
[5] Xingjian SH, Chen Z, Wang H, Yeung DY, Wong
WK, Woo WC. Convolutional LSTM network: A machine learning approach for
precipitation nowcasting. In Advances in neural information processing systems
2015 (pp. 802-810).
[6] Kingma D, Ba J. Adam: A method for stochastic
optimization. arXiv preprint arXiv:1412.6980. 2014 Dec 22.
[7] Nair V, Hinton GE. Rectified linear units
improve restricted boltzmann machines. In Proceedings of the 27th international
conference on machine learning (ICML-10) 2010 (pp. 807-814).
[8]
Srivastava N, Hinton GE, Krizhevsky A,
Sutskever I, Salakhutdinov R. Dropout: a simple way to prevent neural networks
from overfitting. Journal of machine learning research. 2014 Jan
1;15(1):1929-58.