Crohn’s disease (CD) is a chronic inflammatory disorder that commonly affects the small intestine and is a phenotype of inflammatory bowel disease (IBD). Several studies have reported changes in cortical thickness and neurologic deficits in patients with IBD. Here we report alterations in resting state functional MRI connectivity in patients in CD in remission compared to healthy controls, specifically in the executive control and default mode networks. Alterations in resting state functional connectivity in patients with CD may explain some of the mechanisms underlying the development and progression of CD and associated deficits in cognitive and affective functioning.
A cohort of 38 subjects comprising of 19 CD patients (11 males and 8 females, mean age=36.21, SD=16.14) and 19 HC (11 males and 8 females, mean age=38.47, SD=18.76) were tested. Five minutes eyes closed resting-state functional MRI and T1 structural MRI were collected on a 3T GE scanner. The acquisition parameters were: TR/TE/θ = 2600 ms/22 ms/60°, FOV = 100 × 100 mm, slice thickness = 3.5mm isotropic. Anatomical MRI data were acquired using a T1-weighted, three-dimensional, gradient-echo pulse-sequence (MPRAGE) with TR/TE/θ = 8160 ms/ 3.18 ms/12°, FOV = 100 × 100 mm, slice thickness = 1 mm. Seed based FC analysis was performed using the Data Processing Assistant for Resting-state fMRI Basic Edition (DPARSF) toolbox, which is part of the Data Processing and Analysis of Brain Imaging (DPABI) toolbox version 3.1 (http://rfmri.org/dpabi)4. Data preprocessing (including slice timing, realignment, normalization, smoothing (4 mm FWHM), regressing out head motion parameters) were conducted using DPARSF and SPM8. Seed regions in two brain networks5 were utilized in this study: (1) 39 seed regions in executive control network (ECN) consisted of 14 seeds from the CO network and 25 seeds from the FP network as illustrated in Figure 1 and (2) 58 seed regions in the DMN as shown in Figure 2. We calculated the temporal correlations as spontaneous neuronal connectivity to quantify FC and generated a 39x39 correlation matrix for ECN and a 58x58 correlation matrix for DMN per subject for CD and HC groups. From these matrices, a total of 741 and 1653 unique pairwise functional connections were extracted from ECN and DMN respectively for each subject.
Group differences between functional connections of CD and HC groups were examined using independent two-sample t-test. Multiple comparisons correction was performed by estimating the false discovery rate (FDR) based on the Benjamini & Hochberg6 procedure in Matlab R2016b (The MathWorks, Inc., Natick, Massachusetts, United States). After correction of type I error, specific functional connections with corrected p-value < 0.05 were deemed to be significantly different between CD and HC groups for each network. Results were visualized with the BrainNet Viewer Toolbox7.
This work was supported by the National Institute of Child Health and Human Development (grant number K12HD055894 to SS), and pilot funding from the UW-Madison Department of Radiology R&D (to SS) and the UW-Madison Department of Medicine (to SS), by the National Institute of Neurological Disorders and Stroke (grant number K23NS086852 to VP), American Heart Association (AHA) 2015 Innovation and AHA 2015 Midwest Affiliate Grant-in-Aid award (VP), by the National Institute of Health (grant numbers T32GM008692, UL1TR000427, T32EB011434). The content of this paper is solely the responsibility of the authors and does not necessarily represent the official views of the NIH.
The authors wish to thank our patients, and coordinators Jenny Vue and Jill Surfus for their help with patient recruitment and data collection, and the MR staff of the Wisconsin Institutes for Medical Research (WIMR) center.
Conflict of Interest Statement
Dr. SS is a consultant for UCB Biosciences, Inc. All the other authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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