It has been suggested that hippocampal subfields show functional specialization. Resting-state functional MRI studies have improved our understanding of brain function. Using rs-fMRI, we examined the possibility of segmenting the hippocampal subfields at 7T and assessed the functional correlations between the hippocampal subfields with other cortical regions. This method was tested in both healthy controls and temporal lobe epilepsy patients. Only small differences in functional connectivity between healthy controls and epilepsy patients were found. This study demonstrated the potential of assessing the resting-state functional connectivity of the hippocampal subfields with other regions of interest in the cortex.
Seven MRI-negative localization-related temporal lobe epilepsy patients (3 female, 6 male, mean age 41.4 years) and fourteen healthy subjects (6 female, 8 male, average age 39.6 years) were included in this study. MR data were acquired using a 7T Magnetom Siemens MRI System (Siemens Medical Systems, Erlangen, Germany) and a 32-channel phased-array head coil. Before scanning, dielectric pads were placed proximal to the temporal lobe to improve the B1 field homogeneity across the brain. Whole-brain T1-weigthed images (0.9 mm cubic) were obtained with a 3D MP2RAGE sequence with the following parameters: TR/TE = 4500/2.39 ms, TI1/TI2 = 900/2750 ms, α1/α2 = 5°/3°. Furthermore, rs-fMRI data (1.5 mm cubic) were acquired with an EPI sequence, using : TR/TE = 1700/19.0 ms, number of measurements = 200 and TA = 6:00 min.
Data preprocessing steps were performed to prepare MP2RAGE data for segmentation. Preprocessing included: skull stripping yielding a mask to improve brain extraction and gradient distortion correction (fsl v5.0.1, www.fmrib.ox.ac.uk/fsl). Cortical and hippocampal subfield segmentation was performed with FreeSurfer v6.0. Functional data preprocessing included, bias field correction, brain extraction, motion correction, distortion correction, slice timing correction, spatial and temporal filtering and deregression of white matter and cerebrospinal fluid (FSL and SPM12). The functional, structural and segmented images were aligned (FLIRT in fsl). Seven regions of interest (ROIs) in the hippocampus were selected from the segmentation: presubiculum, subiculum, Cornu Ammonis 1 (CA1), CA2/3, CA4 and the Dentate Gyrus (DG). These regions were both selected in the left and right hippocampus. These ROIs were used for seed-based fMRI analysis. Correlations were assessed between these hippocampal subfields and different ROIs selected in the frontal, temporal, parietal and occipital lobes. The number of strong correlations between the hippocampal subfields and the different lobes was calculated by counting the number of strong connections. For this calculation, the ROIs within a lobe were combined. Strong connections were defined as the highest 20% of the found functional correlations. The average number of strong connections in the healthy controls was compared with those in the epilepsy patients.
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