Simultaneous recording of fMRI and electrophysiological (EP) signals, e.g. electroencephalography (EEG), electrocorticography (ECoG), and local field potentials (LFP) holds significant potential to evaluate the brain dynamics and its underlying neural circuitry across various spatiotemporal scales. However methodological challenges associated with bio-potential recording within MRI still work as a bottleneck. Here we present a miniaturized, MR-compatible device that can adaptively learn the presence of electromagnetic artifacts and can perform high fidelity EP recording (ECG, LFP, SEP etc.) wirelessly through the MR-receiver coil. The low power device provides a cheap and simple solution for recording various electrophysiological signals during concurrent fMRI.
Methods
The device utilized a machine-wound copper coil (14mm diameter) to pick up variations in the magnetic field inside the MRI bore. The gradient detection module delineated periods with changing magnetic fields and generated a binary signal (gradient trigger) which provided the onboard microcontroller (μC) with information of when to acquire gradient free EP signals. The gradient trigger also allowed the μC to learn patterns of when gradient noise would corrupt EP data which helped to improve the recorder’s functionality. Based on the state of the gradient trigger, the EP signal was either amplified and digitized, or simply attenuated to assure the analog components did not saturate due to the induced gradient artifacts. The EP signal was primarily processed through an analog front end circuit (voltage limiting circuit and differential low pass filter) before being amplified (+27 dB) or attenuated (-27 dB) by the variable gain amplifiers to provide an extra layer of protection against the strong gradient artifacts (Fig. 2). The analog signal was ultimately digitized with a 0.5 uV resolution during the silent periods of the MRI sequence to provide gradient free EP data. The digitized packets were wirelessly transmitted through a low power ultra-high frequency transmitter using frequency shift keying at discrete non-overlapping RF frequencies. Surplus bandwidth of receiver coil was utilized by increasing the imaging field of view (FOV) in the readout direction to accommodate the non-MR signals (Fig. 1a). The transmitted EP signals and the fMRI images were stored conveniently in the same file following DICOM archiving standards and were later extracted through a custom software based on their respective frequency content. Additionally, the software isolated MR data containing all the imaging information and stored it in the file format compatible with original scanner software for image reconstruction without the presence of the non-MR data lines. All the experiments were carried out with double-shot gradient-echo echo-planar imaging (EPI, 1s repetition time, 16.52ms echo time, 55° flip angle, 1×1×1 mm3 voxel size) in a 7-tesla small-animal MRI system (BioSpec 70/30, Bruker). The pulse sequence, alongside sampling and wireless transmission of data packets can be seen in Fig. 3. The recorder system was evaluated for efficacy and MR-compatibility through a series of in vivo experiments using Sprague Dawley rats and recording evoked potential from the forelimb somatosensory cortex during concurrent fMRI imaging.1. K. Anami et al., “Stepping stone sampling for retrieving artifact-free electroencephalogram during functional magnetic resonance imaging,”Neuroimage, vol. 19, no. 2, pp. 281–295, 2003.
2. L. G. Hanson, T. E. Lund, and C. G. Hanson, “Encoding of electrophysiology and other signals in MR images,” J. Magn. Reson. Imaging, vol. 25, no. 5, pp.1059–1066, 2007.