Avinash Pramod Chinchali1, Michael Loecher2, and Daniel B Ennis1,2
1Bioengineering, UCLA, Los Angeles, CA, United States, 2Radiological Sciences, UCLA, Los Angeles, CA, United States
Synopsis
Eddy current
induced phase errors lead to PC-MRI velocity errors that must be corrected. Static
tissue fitting is commonly implemented to correct these phase errors. The aim
of this work was to quantitatively compare corrections made using local and
global static tissue fitting techniques over a wide range of SNR. Average correction
differences between local and global strategies in static tissue were on the
order of 0.9 cm/s for low SNR protocols and 0.1 cm/s for high SNR protocols.
Local correction introduced phase error in ~5% ROIs (always when SNR<30). Local
correction is therefore suitable for higher SNR PC-MRI acquisitions.
Introduction
Despite advances in gradient hardware1,2, eddy
current induced phase errors remain a problem for quantitation in PC-MRI. Eddy
current induced phase errors lead to velocity errors (veddy) observed
to be as large as 10% - 25% in certain applications3. The goal of
static tissue correction is to mitigate the impact of eddy current induced
phase errors. Studies have shown reduction of velocity bias in background
tissue on the order of 60% for local static tissue corrections and 50% for
global static corrections, with no statistical difference found between the two
schemes3. It is hypothesized that local correction strategies are
less robust to noise influences, as these strategies utilize phase estimates
from a significantly smaller subset of static pixels to generate a polynomial
fit describing eddy current error. The performance differences between local
and global correction strategies have yet to be thoroughly characterized for a
wide range of SNR, and is therefore an aim of this work.
Methods
An adult torso sized phantom was filled with a polyacrylic
acid gel slurry to minimize motion during the imaging experiment. Axial slices
were acquired at 3.0T (Siemens, Prisma) using a 3D velocity encoding protocol
with the following acquisition parameters: VENC=80 cm/s, 6° flip angle, TE=3.37 ms,
TR=5.16 ms, 1355 Hz/pixel bandwidth, 133x450 mm FOV, 1.78x1.78 mm2/pixel resolution. This is a
deliberately low SNR acquisition, and the number of averages was increased
incrementally from 1 to 64 for subsequent acquisitions to obtain higher SNR
datasets. ROIs of varying shape and size were established within static tissue
in axial slices, and this process was repeated for datasets with varying number
of averages (i.e. SNR). The same 24 ROIs
are prescribed across different SNR datasets, to obtain a total of 144 ROIs. 7
of 144 ROIs were discarded as they displayed non-significant phase offset prior
to correction, resulting in a total of 137 ROIs analyzed. Local correction utilized
phase estimates from a 3-pixel width annulus surrounding ROIs to generate a polynomial
fit describing eddy current phase error, similar to previous studies3.
Global correction utilized phase estimates from all static pixels within the
FOV, excluding ROI pixels, to develop a polynomial fit. Corrected phase
estimates were obtained within ROIs upon subtraction of polynomial offset
estimates on a pixel basis. Local and global polynomial fits were second order
in x and y, and were generated using least-squares methods. Local and global
corrections were separately applied to all established ROIs. Successful eddy
current correction of static ROIs results in a mean velocity value that is
significantly closer to zero baseline following correction. Corrections that
result in a ROI mean velocity that is farther away from zero baseline are considered
unsuccessful, as they introduce phase error. The magnitude of the difference
between local and global corrected mean velocities was calculated and averaged for
all ROIs pertaining to a single dataset. SNR levels were calculated for each
dataset by dividing the mean signal within the static phantom by the standard
deviation of background noise. Results
137 of
137 established ROIs displayed mean velocity values that were significantly
closer to zero baseline following global corrections. 130 of 137 established
ROIs displayed mean velocity values that were significantly closer to zero
baseline following local corrections, while 7 were further from zero,
indicating that additional error was introduced. These errors were all introduced
during correction in datasets with an average SNR below 30. Of the 48 ROIs
established in datasets with average SNR above 30, global fitting provided a
closer correction to zero baseline in 35 of 48 ROIs and local fitting provided
a closer correction to zero baseline in 13 of 48 ROIs. The resulting average
correction difference vs. SNR plot (Fig 4) shows
that there is more disagreement between correction methods as SNR decreases. Correction
differences as large as 0.9 cm/s were observed between the two strategies for the
lowest SNR protocols.
Discussion
Local static tissue fitting techniques were seen to occasionally
introduce phase error when average SNR of the implemented protocol fell below
30. As average SNR continued to decrease below 30, local fitting techniques
began to introduce error with increased occurrence. Global fitting techniques
showed no instances of introducing phase error across all average SNR levels. This study indicates that local
fitting strategies may only be suitable above a certain SNR, and warrants
further investigation. For datasets with average SNR above 30,
performance difference between the two fitting strategies is highly ROI
dependent.
Acknowledgements
No acknowledgement found.References
1. Bernstein et al. Handbook of MRI pulse sequences: Ch 10.
2004.
2. Kozerke et al. Analysis and correction of background velocity
offsets in phase-contrast flow measurements using magnetic field monitoring.
Mag Resonance Med. 2012.
3. MacDonald et al. Phase error correction in time-averaged 3D phase
contrast MRI of cerebral vasculature. PLOS One. 2016.