P. James Ross1, Lionel M. Broche1, and David J. Lurie1
1Aberdeen Biomedical Imaging Centre, University of Aberdeen, Aberdeen, United Kingdom
Synopsis
Here we present a simple post-processing algorithm that is able to correct ghosting caused by a slow off-resonance drift caused by the use of a resistive magnet. The algorithm is described and validated in simulations, phantoms and in vivo.
Purpose
Fast Field-Cycling MRI1 (FFC-MRI) is a novel MRI technique in which
the external magnetic field is switched during the imaging experiment. By doing
this, FFC-MRI grants access to information which is invisible to conventional
MRI scanners, including the variation of T1 with magnetic field. These
measurements, known as T1-dispersion, exhibit great promise as a new
form of endogenous image contrast, and may have application in the early
diagnosis of a range of diseases including osteoarthritis2, cancer and neurodegeneration.
In our system, the use of a resistive
magnet to perform field-cycling means that the B0 field is subject
to a slow drift with a corresponding drift in frequency. Even when this drift
is controlled using an NMR lock or a current feedback loop, small off-resonant
effects persist. This results in small discontinuities in k-space, which
manifest as ghosting in the phase-encode direction.
Here we present a post-processing
technique3 which is able to correct these ghosts and recover the
original image with no prior knowledge of the field-drift.Methods
The magnet (Tesla Engineering Ltd,
Storrington, UK) is of a resistive design and is driven by 18 current
amplifiers (IECO, Helsinki, Finland). The main magnetic field is set and
controlled by a 16-bit, high-precision DAC which provides a field resolution of
3 μT. This limits real-time field corrections to 3 μT, or approximately
125 Hz, which is sufficient to prevent severe off-resonance effects but
still results in ghosting artefacts.
We therefore developed a
post-processing algorithm using MATLAB 2014a (Mathworks, Natick MA USA) to attempt to correct the phase errors. The
algorithm takes the form of an iterative method inspired from similar
techniques for correcting motion artefacts4,5. As a minimisation
criterion we used the image background; an image with no ghosting should have
minimal background signal.
During each iteration the algorithm
estimates the phase correction for every line of k-space using a sequential
programming (SQP) method, the image is reconstructed and the background signal
is estimated. The algorithm terminates once the background signal has
converged. Constraints were added on the SQP search in order to null the 1st
order moment of the phase correction to prevent translation along the phase-encode
direction.
The algorithm was tested in
simulations and on image data collected on phantoms and in vivo. For the
simulations we used the Monte-Carlo method: a 128x128 artefact-free
gradient-echo image was used as the base for 1000 test images with randomly
added noise, phase scatter and amount of background area. Results
For the Monte-Carlo simulations none
of the images failed to converge. Figure 1(a) shows the reference image while
(b) shows the same image following the addition of random phase errors, and (c)
shows the difference between the original and the corrected image. Figure 1(d)
shows the agreement between the phase correction recovered by the algorithm and
the ground truth error applied to the original image. The average
reconstruction time for a 128x128 image was 7 s on a desktop i5 processor.
The processing time follows a square relationship with the matrix size;
upscaling the image to 512x512 increased the processing time to 104 s. Superior time efficiency can be
realised by parallelising the corrections for multi-dimensional data.
Experimental data from phantom (Figure
2) and in vivo (Figure 3) imaging reconstructed using the algorithm demonstrate
excellent results with no visible ghosting.Discussion
The
algorithm presented here has demonstrated that artefact free images can be
obtained on our FFC-MRI scanner even where there is a drift in resonant
frequency without excessive post-processing time. So far we have only tested
the algorithm on Cartesian sampled data, however the algorithm should be
applicable to other sampling strategies. We have tested the algorithm only to
correct the phase errors resulting from the frequency drift of our magnet, but
it would be interesting to investigate applications for other types of artefact
such as motion.
Acknowledgements
We acknowledge support for this project from the European Union, under Horizon-2020 project 668119, “IDentIFY”References
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