Subject motion is a major problem in MRI, leading to less diagnostic information in the clinic and lowering data quality in research. Especially at high field, the relatively long scan times applied for high resolution imaging makes motion one of the major challenges. A promising solution is to update the field-of-view in real time based on tracking with MRI-based navigators. Here we show an implementation for prospective motion correction using MRI navigators at 7T. The framework was very flexible, as the navigator and target sequence are simply defined as two different scans, which can be interleaved at any sequence level.
The iMOCO framework allows instantaneous switching between sequences at any time point in the execution [3,4]. Therefore, the navigator sequence and host sequence were simply defined as two subsequent sequences which are started simultaneously.
In the navigator sequence, the prospective motion correction (PMC) functionality is used. The PMC functionality registers the latest acquired dynamic volume to the first, and uses the realignment parameters for updating the translation offsets and orientation matrix of the host sequence in real-time.
Both water-based (vNAV[1] 7x7x7mm, EPI=31, halfscan=0.87x0.87) and fat-selective (fat-NAV[2], 7x7x7mm, EPI=3, SENSE=2x2, halfscan=0.89x0.85) volumetric navigator sequences were investigated in two high resolution host sequences; 3D MP-FLAIR and multi-slice T2 weighted turbo spin echo. Especially the multi slice T2 weighted turbo spin echo (MS-T2 TSE) has shown to be highly sensitive to motion artifacts in clinical studies. 3D MP-FLAIR was acquired with an echo train length of 200, TE=389, TR=5000, 0.7x0.7x1.4mm resolution in 8:20 min. The MS-T2W TSE had an echo train length of 9, TE=60, TR=3373, FOV=220x190, resolution = 0.5x0.5x1, 32 slices, total scan time 8:22 min. Reacquisition was performed if a motion update exceeded 1 mm of equivalent displacement.
For the 3D sequences, the navigator was inserted in the long relaxation after a shot. The MS-T2 TSE sequence inherently has some time gaps due to SAR limitations. Although a segmented navigator sequence could fit into the native gaps, here we choose minimal slice spacing to generate a large gap in the end of each TR a non-segmented navigator sequence could fit into (see Figure 1).
All experiments were performed on a 7T MRI system (Achieva, Philips, Best, Netherlands) with a dual transmit coil and a 32-channel receive head coil (Nova Medical, Wilmington, MA, USA). All experiments were performed in accordance to the local ethical guidelines.
Figure 2 shows the results of using a vNAV (left) and a fat-NAV (right) in the 3D FLAIR sequence. Although the navigator is performed at the end of the relaxation curve, and a 1 degree nominal flip angle is used, a distortion of the steady state magnetization is observed. With fat-selective navigators, this problem is circumvented.
Figure 3 shows MS-T2-TSE sequences (which are highly sensitive to motion) with and without motion correction. The iMOCO restores the image quality despite subject motion.
[1] D. Stucht, K. A. Danishad, P. Schulze, F. Godenschweger, M. Zaitsev, and O. Speck, “Highest Resolution In Vivo Human Brain MRI Using Prospective Motion Correction,” PLoS One, vol. 10, no. 7, p. e0133921, 2015.
[2] D. Gallichan, J. P. Marques, and R. Gruetter, “Retrospective correction of involuntary microscopic head movement using highly accelerated fat image navigators (3D FatNavs) at 7T,” Magn. Reson. Med., vol. 75, no. 3, pp. 1030–1039, 2016.
[3] M. Andersen, V. Boer, A. Marsman, and E. Petersen, “A generalized prospective motion correction framework for improved spectroscopy, structural and angiographic imaging,” Proc. Intl. Soc. Mag. Reson. Med., p. 3934, 2017.
[4] M. Henningsson, G. Mens, P. Koken, J. Smink, and R. M. Botnar, “A new framework for interleaved scanning in cardiovascular MR: Application to image-based respiratory motion correction in coronary MR angiography,” Magn. Reson. Med., vol. 73, no. 2, pp. 692–696, Feb. 2015.
[5] M. D. Tisdall, A. T. Hess, M. Reuter, E. M. Meintjes, B. Fischl, and A. J. W. Van Der Kouwe, “Volumetric navigators for prospective motion correction and selective reacquisition in neuroanatomical MRI,” Magn. Reson. Med., vol. 68, no. 2, pp. 389–399, 2012.