Phosphate metabolite distribution in gray matter and white matter in human brain is compared between healthy control (HC) and subjects with Multiple Sclerosis (MS) using 31P Magnetic Resonance Spectroscopic Imaging (MRSI) at 7T. Phosphate metabolites are decreased in GM in MS compared to healthy controls.
Twenty seven healthy control subjects (age range: 24-82 years, 17 females and 10 males) and forty nine subjects with multiple sclerosis (age range: 28-68 years, 35 females, 14 males) were recruited and enrolled in IRB approved protocols between years 2009 and 2016. There were 3 primary progressive MS (PPMS, 1M/1F), 8 secondary progressive MS (SPMS, 3M/5F) and 39 relapsing remitting MS (RRMS, 10M/29F) subjects in MS cohort.
MR data acquisition was performed on a whole-body 7T Siemens MAGNETOM system using singly-tuned RF coils6. Anatomic MPRAGE images [TR/TI/FA: 2.30 s/1.05 s/ 6°, 0.8 mm3, TA = 10.8 min] were acquired using 8-or 24-channel RF array head coil. A modified quadrature transmit/receive 31P coil, (Siemens, Erlangen, Germany) and integrated with a home-built proton loop coil for acquiring scout images, referred to as a “1Halo” coil7, was used for 31P MRSI acquisition.
A 3D 31P MRSI FID acquisition, with gradient echo spatial encoding, [TR/TE/FA/PD: 300 ms/2.3 ms/24°/600 µs, np = 1024, SW = 10 kHz, resonance frequency and chemical shift centered at phosphocreatine (PCr) peak, FOV: (250 mm)2x200 mm, data matrix: 20 x 20 x 16, reconstruction data matrix: 32 x 32 x 16] and 3D cosine-weighted spatial phase encoding was performed (2379 unique k‑space locations, ns = 12, total 7476) to minimize the acquisition time (37.5 minutes). Nominal voxel volume was 1.95 mL for this acquisition. Software routines developed in Matlab were used to create input files for batch processing and analyzing spectroscopy data using jMRUI software (AMARES routine8) (Figure 1). High spatial resolution T1-w MPRAGE images were segmented into GM (gray matter), WM (white matter), CSF (cerebrospinal), and SM (skeleton muscle) using SPM129. FIRST routine was used to define GM subcortical brain structures10. WM lesions were identified using MPRAGE and/or FLAIR image sets (Figure 2). Scout to MPRAGE transformation matrix was used to co-register (FLIRT11) segmented tissue images to 31P spectroscopic data.
A volume of interest (VOI; 160 mL) in supratentorial brain region superior to the ventricles was defined in the brain atlas (Figure 3) and transformed to each subject’s brain, selecting same brain volume without any significant B1- and B0–inhomogeneity effects. Linear mixed-effect regression models were constructed to estimate phosphate signals within pure tissue types for each subject and fitted using restricted maximum likelihood (Linear and Nonlinear Mixed Effects Models library in R12,13). These models included terms for group membership, tissue class, and their interactions as well as subject specific random errors (εSubject) as shown in Equation:
SMetabolite = GM + WM + Group + GM*Group + WM*Group + εSubject +εrandom
The estimated metabolite peak amplitudes for the pure tissue classes from the remaining models were then compared for group differences using t-tests. A separate regression analysis for signal ratios (metabolite/Total 31P signal) was also modeled for a comparison.
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