Asha Singanamalli1, Matthew Tarasek1, Qin Liu2, Desmond Yeo1, and Thomas Foo1
1GE Global Research, Niskayuna, NY, United States, 2GE Healthcare, Waukesha, WI, United States
Synopsis
In this study, we evaluate the sensitivity of peak and
global SAR to false positive (FP) and false negative (FN) errors in
segmentation for three major brain tissue types: Gray Matter (GM), White Matter
(WM) and Cerebrospinal Fluid (CSF). Voxel probability maps of GM, WM and CSF
are thresholded at various intervals to generate multiple anatomical head
models from a simulated T1w MRI dataset.
FP and FN errors in segmentation are evaluated for each anatomical model
with respect to the ground truth. Electromagnetic simulations are performed to
relate these errors to peak and global SAR values at 3T.
Purpose
Radiofrequency
(RF) power deposition, quantified using Specific Absorption Rate (SAR), may pose
a safety concern in magnetic resonance imaging (MRI). The use of multiple generic
human body models (HBM) in EM simulations can yield estimates of global and
local SAR safety limits for transmit coils, but practical implementation
requires the SAR limits to be conservative. Recent advances[1] show a trend
towards subject-specific HBMs for more accurate SAR estimation, which is
particularly important for parallel transmit coils as the increased degrees of
freedom for RF transmit amplitudes and phases compound with uncertainty in the
HBM. While various registration and segmentation based approaches can be used
to generate subject-specific HBMs, each approach invariably introduces tissue
segmentation errors. In this work, we investigate downstream effects of such errors
on SAR prediction.Methods
Simulated T1w MRI, generated using anatomical
models of normal brains, was acquired from the Brainweb database[2]. T1
data was simulated with the following parameters: SFLASH (spoiled FLASH)
sequence with TR=22ms, TE=9.2ms, flip angle=30 deg and 1 mm isotropic voxel
size. The corresponding discrete anatomical models provide a unique class label
at each voxel that is most representative of that voxel. The model comprises of
11 class labels, including background, CSF, Gray Matter, White Matter, Fat,
Muscle, Muscle/Skin, Skull, Vessels, Around Fat, Dura Matter, and Bone Marrow.
Statistical Parametric Mapping
(SPM)[3] was used to obtain voxel probability maps of Gray Matter (GM),
White Matter (WM) and Cerebrospinal Fluid (CSF) from the simulated T1 volume. Six
anatomical models, a few of which are shown in Figure 1, were generated by
varying the probability thresholds for each tissue type. Segmentation errors for
each of these tissues were evaluated with respect to ground truth using false
positive error (FPE) and false negative error (FNE) metrics.
A
16-rung high-pass birdcage head coil (dia. 37.0 cm, height 40.0 cm) in an RF
shield was modelled using the FDTD software Sim4Life (ZMT, Zurich, Switzerland).
The coil was tuned to 127.7 MHz with a loader phantom (σ=0.7 S/m, εs=78),
and driven in quadrature mode in simulations using the ground
truth anatomical model as well as the SPM output based models to evaluate
differences in peak and global SAR.Results & Discussion
Results suggest that global SAR has
stronger associations with segmentation errors than peak SAR. Plots in Figure 2
indicate that CSF FPE (R2 = 0.89) and FNE (R2 = 0.92)
show the strongest linear association with global SAR, while GM and WM show
moderate associations (0.4 < R2 <0.8). As shown in Figure 3, there
was no strong relationship (R2 < 0.1) between peak SAR value and FPE
or FNE. This is likely because peak SAR location varies with the different
anatomical models and may therefore not be directly comparable.
The slope of linear trendlines
indicate that changes in CSF has the largest impact on global SAR, followed by GM
and WM, the sequence of which is inversely associated with with tissue volume. In
addition, the regression results show that FPE in CSF and WM is inversely
correlated with global SAR whereas GM FPE is directly correlated with global
SAR. On the contrary, FNE in CSF and WM is directly correlated with global SAR
whereas GM FNE is inversely correlated with global SAR.
Although the results from EM
simulations provide some intuition for the impact of various types of
segmentation errors on SAR estimates, it is important to further examine the
impact on temperature changes in order to better understand the extent and type
of allowable segmentation errors. Towards that end, thermal simulations are
underway which will then allow us to connect segmentation errors with expected
temperature change. Conclusion
In
this work, we study the impact of over- and under-segmentation in CSF, WM and
GM on SAR estimates using simulated T1w MRI. While there was no apparent linear
relationship between peak SAR and segmentation errors, linear associations were
found between the segmentation errors and global SAR. These results imply that
patient-specific anatomical models can be systematically tailored to favor the
types of errors that result in over-estimation of global SAR in order to ensure
patient safety while moving towards subject specific anatomical models.
However, additional work needs to be done to better understand the relationship
between segmentation errors and peak SAR.Acknowledgements
No acknowledgement found.References
[1] Jin, J., Liu, F., Weber, E., &
Crozier, S. (2012). Improving SAR estimations in MRI using subject-specific
models. Physics in medicine and biology, 57(24), 8153.
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B., Evans, A. C., & Collins, D. L. (2006). Twenty new digital brain
phantoms for creation of validation image data bases. IEEE transactions
on medical imaging, 25(11), 1410-1416.
[3] Penny, W.
D., Friston, K. J., Ashburner, J. T., Kiebel, S. J., & Nichols, T. E.
(Eds.). (2011). Statistical parametric mapping: the analysis of functional
brain images. Academic press.