Daniel Auger1, Xiaoying Cai1, Changyu Sun1, and Frederick Epstein1,2
1Biomedical Engineering, University of Virginia, Charlottesville, VA, United States, 2Radiology, University of Virginia, Charlottesville, VA, United States
Synopsis
Displacement encoding with stimulated
echoes (DENSE) measures myocardial displacements using the signal phase. Phase
wrapping generally occurs during systolic phases, thus spatiotemporal phase
unwrapping algorithms are required to compute motion trajectories and strain.
Current DENSE analysis methods are aided by user-defined myocardial contours. A
fully automatic DENSE analysis method is proposed where phase predictions using
multiple pathways and region growing are used to simultaneously unwrap and
segment the myocardium. Compared to a prior automatic method, this method selects
fewer extramyocardial pixels, reducing the computation time, and has a greater
phase unwrapping success rate.
Introduction
Cine DENSE measures myocardial
displacements by encoding tissue displacement into the signal phase. Displacement
encoding frequencies (ke) are selected to balance signal-to-noise
ratio, displacement sensitivity, and artifact suppression [1], resulting
in phase wrapping during systole. Spatiotemporal phase unwrapping is required
to compute Lagrangian motion trajectories and strain [1, 2]. Phase
unwrapping may be aided by delineating the myocardium using manually-defined
contours [3]. A fully automatic phase unwrapping method would
eliminate the need for user intervention, and a method was previously developed,
however it identified many extramyocardial pixels as input into the displacement
trajectory and strain calculations [2], increasing the computational
burden. A further limitation of the previous algorithm was an inability to
unwrap DENSE datasets with multiple cycles of wrap. We propose a phase
unwrapping algorithm based on phase predictions using multiple pathways and
region growing [4]. This approach may identify fewer extramyocardial
pixels and successfully unwrap datasets with multiple cycles of phase wrap.Methods
The
proposed method utilizes multiple phase prediction pathways and consistency
checking for region growing. Initially,
a small myocardial region is automatically identified by applying principle
component analysis to DENSE images. The
initial region is selected at an early cardiac phase where phase wrapping has
not occurred. A perimeter of potentially phase-wrapped pixels around the initial
region is identified, and multiple spatiotemporal linear predictions from
previously unwrapped pixels are used to predict the phases of the perimeter
pixels (Fig 1(A)). Once an attempt is made to unwrap a pixel, reliability thresholds
are applied to assess the attempt. The thresholds are based on the overall
predicted phase (TPrediction) and the variation of the multiple predictions
(TDeviation). If the attempt is deemed reliable, the pixel is
included in the unwrapped region. The process continues, allowing the region to
grow and including regions with reliable predictions and rejecting regions with
unreliable predictions, i.e., noise. For 2D displacement encoding, the
algorithm is simultaneously applied to both encoding directions so that the
region grows identically for both dimensions. The prior automatic unwrapping
algorithm [2] and our proposed algorithm were applied to 5 volunteer
datasets acquired using 2D short-axis cine DENSE with localized signal
generation and with ke = 0.1 cyc/mm, in-plane pixel size of 2.3 × 2.3
mm2, and 24-32 cardiac phases. To generate gold standard data for
comparisons, the myocardium was manually contoured, phase unwrapping was
applied to the segmented region, and the unwrapping results were manually
inspected to ensure the absence of unwrapping errors. Optimal thresholds were
determined by using the new algorithm with a range of thresholds and finding
those that minimize the root mean square (RMS) error between the gold-standard
data and the masked results from the proposed algorithm. To test the algorithm,
additional datasets (n=3) were acquired with displacement encoding frequencies
of 0.14, 0.18 and 0.22 cyc/mm, leading to increased degrees of phase wrapping. Displacement
trajectories and principle shortening strain (PSS) were calculated using the proposed
method and the gold standard method [3, 4].Results
Fig 1(B) illustrates RMS error plots
for all ke values to identify the best reliability thresholds. The unsmooth
RMS error function is due to the non-linearity of the phase-unwrapping operation.
Optimal values of π
/3 for TPrediction and 7π
/12 for TDeviation were identified.
Fig. 1(C, D) illustrate poor phase unwrapping where either TPrediction and
TDeviation were too low and
regions of myocardium were improperly excluded during region growing, or TPrediction
and TDeviation were too
high and regions of surrounding tissue and blood were improperly included in
the growth region and caused unwrapping errors. Fig. 1(E) illustrates successful
region definition and myocardial phase unwrapping using the optimal thresholds.
Fig. 2 shows that the proposed algorithm excludes more extramyocardial pixels than
the prior automatic method. Fig. 3 illustrates that the proposed algorithm successfully
unwrapped datasets with multiple cycles of phase wrapping, in contrast to the
prior algorithm. For different ke values, Fig. 4 illustrates the decrease
in incorrectly unwrapped frames using the proposed algorithm compared to the prior
algorithm. Fig 5(A) shows an end-systolic PSS map automatically computed using the
proposed method. Fig 5 (B-E) show the comparison of PSS computed automatically and
using manually-delineated myocardial contours, and Fig 5(D, E) show the
Bland-Altman and correlation plots comparing the two methods indicating a small
bias (+0.007) and excellent correlation (R2=0.82).Conclusion
Fully
automatic phase unwrapping using multiple phase prediction pathways and region
growing provides better delineation of myocardial tissue and more reliable
phase unwrapping than prior automatic methods.
The proposed method may facilitate fully automatic in-line strain
mapping for DENSE in the future.Acknowledgements
Research support from Siemens HealthineersReferences
References:
1. Spottiswoode. IEEE TMI 2007; 26:15-30 2. Gilliam. IEEE TMI 2012; 31:1669-81. 3. Spottiswoode. MIA 2009; 13:105–115 4.Xu. IEEE TGRS 1999; 37:124-34