Axonal damage is thought to be the substrate of disability in multiple sclerosis. We have recently introduced a method based on the spherical mean framework that provides per-voxel axon diameter and volume fraction that is independent of fiber crossings/dispersion. We apply this approach to estimate whole brain axon diameter and density in a group of patients with MS to healthy controls. Widespread alterations in axon diameter and density were found throughout the NAWM and lesions of MS patients that may reflect diffuse axonal loss and swelling in the setting of chronic demyelination.
Data acquisition Eight people with MS (5 RRMS, 3 PMS) and 8 healthy controls (HCs) were scanned on the 3T Connectome scanner equipped with 300mT/m maximum gradient strength using a custom-build 64-channel head coil. Sagittal 2-mm isotropic resolution diffusion-weighted spin-echo EPI images were acquired with whole brain coverage. The following parameters were used: TR/TE = 4000/77ms, δ=8ms, Δ=19/49ms, 8 diffusion gradient strengths linearly spaced from 30-290mT/m per Δ, 32-64 diffusion directions, parallel imaging (R=2) and simultaneous multislice (MB=2). High-resolution anatomic T1 MEMPRAGE and T2/SPACE-FLAIR sequences were also acquired for lesion localization and tissue segmentation.
Data analysis Diffusion data were corrected for gradient nonlinearity10, motion, susceptibility and eddy current distortions using the TOPUP and EDDY tools in FSL11-13. Voxel-wise fitting for axon diameter, restricted (fr) and hindered (fh) volume fraction, and hindered diffusivity (Dh) according to the spherical mean model7,14 was performed using Markov Chain Monte Carlo (MCMC) sampling. Neurite orientation dispersion and density imaging (NODDI) analysis15 was also performed for comparison. Regions of interest (ROIs) in MS lesions were manually drawn on FLAIR images by an experienced neuroradiologist. NAWM masks were created by combining Freesurfer segmentations for the corpus callosum and hemispheric white matter, excluding lesions in all MS patients. Microstructural and NODDI metrics in NAWM of MS patients and white matter of HCs were compared using the Mann-Whitney U test and in lesions and NAWM of MS patients using the Wilcoxon signed-rank test.
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