Nadège Corbin1,2, Elodie breton1, Michel de Mathelin1, and Jonathan Vappou1
1ICube, University of Strasbourg, CNRS, IHU Strasbourg, Strasbourg, France, 2Wellcome Trust Centre for Neuroimaging, UCL Institute of Neurology, London, United Kingdom
Synopsis
MR Elastography (MRE)
requires substantial data processing involving phase image reconstruction, wave
enhancement and inverse problem solving. The objective of this study is to
propose an alternative reconstruction method based on direct k-space data
processing, particularly adapted to applications requiring fast MRE measurements
such as the monitoring of elasticity changes. Elastograms are directly reconstructed
from raw MR data without prior phase image reconstruction, circumventing thereby
the delicate step of phase unwrapping. The k-space MRE method shows promising results by
providing elasticity values similar to the ones obtained with conventional MRE in
phantoms and in vivo in porcine liver.
Purpose
Magnetic
Resonance Elastography (MRE) requires substantial data processing involving
phase image reconstruction and unwrapping, harmonic analysis through temporal
Fourier transforms and elastogram reconstruction through the resolution of the MRE
inverse problem. In this study, an alternative method is proposed for
accelerating and simplifying the reconstruction of the elastogram for applications
that require fast MRE information, such as the monitoring of elasticity changes
during thermal ablations in interventional radiology1,2.
Methods
The key
feature of the proposed method is that elastograms are reconstructed from
k-space MR data, without any need for phase image reconstruction. This allows
circumventing several steps such as unwrapping and spatial inverse and forward
Fourier transforms. In Fig.1, the
typical reconstruction process used in MRE and the proposed method are
compared.
MRE relies
on the encoding of tissue motion in the phase $$$\phi$$$ of the complex MRI signal. The MRE phase shift
can be written as: $$$ \phi_s = C_1cos(-\overrightarrow{k}.\overrightarrow{u} +
C_2)$$$, where $$$ \overrightarrow{k} $$$ is the
wave number, $$$ \overrightarrow{u} $$$ the position vector, $$$ C_1$$$ and $$$
C_2 $$$ are constants related to motion encoding. The k-space signal acquired
in MRE experiments can be written (here in 1D for clarity) as:
$$ S(\nu_x)=\sum_{x=0}^{N_x-1}M(x)e^{j\phi_0(x)+jC_1(x)cos(-\frac{k_xx}{N_x}+C_2)}e^{-\frac{j2\pi
\nu_xx}{N_x}} $$
with $$$ \frac{k_x}{N_x} $$$ being the normalized
discrete wave number
and $$$ \nu_x $$$ the
discrete spatial frequency. It can be shown that the presence of the cosine
pattern in the exponential term results in an infinite number of harmonics in
the k-space3,4. Figure 2 shows the spectrum of a simulated MRE
1D-signal. The objective of our method is to select only the frequency
components of interest. The solution used here is inspired from the harmonic
analysis used in conventional MRE, where a temporal Fourier transform is
performed on phase images acquired with varying phase shifts between mechanical
excitation and motion encoding gradients. In the proposed method, the temporal
Fourier transform is directly applied on the k-space data and not on the phase
images. Spatial harmonics are thus separated in the frequency domain, allowing
to select the spatial components of interest associated to the temporal
frequency of interest (Fig.2c). Finally, the Local Frequency Estimation (LFE)5
is performed directly on this filtered k-space data.
Experimental feasibility is assessed both in a
gelatin phantom (4
and 8%)
and in the liver of a porcine model in vivo. In a second phantom, changes in
elasticity are monitored in real-time during the solidification of a liquid gelatin
inclusion. Experiments were performed at 1.5 T (MAGNETOM Aera, Siemens) with
the body coil. Bipolar motion encoding gradients were added in a spoiled
gradient echo sequence. 4 (or 3 for phantom 2) phase-offsets evenly spaced
across a mechanical period were acquired. Fractional encoding was used with excitation/encoding
frequencies set to 120/220 Hz for phantom 1, 40/90Hz in vivo, and 120/90 Hz
during the solidification of gelatin. Elastograms are reconstructed with both the
direct k-space MRE method and the conventional MRE processing including phase unwrapping. Results
LFE-derived elastograms obtained by both methods are
very similar in phantom and in vivo in porcine liver (Fig.3). The local
wavelength obtained by the k-space MRE method and conventional MRE in vivo in
the liver is equal to 28.45±5.44 mm and 30.50±7.9 mm, respectively. During the solidification of the gelatin, the
variation of elasticity estimated with the proposed method is comparable to the
reference one (Fig.4).Discussion
The k-space
MRE method shows promising results by providing similar elasticity values to
the ones obtained with conventional MRE while decreasing the number of
processing steps. Since its framework remains in the complex domain, the proposed method offers the advantage of
being inherently immune to phase wrapping, a known challenge in MRE6,7.
One limitation of this method is that it requires a minimum number of
phase offsets (typically 3 to 8 depending on shear wave amplitude) to select
correctly the frequency of interest. One must also remain aware that the filtered k-space is convolved by the magnitude spectrum. Although this influence is deemed to be negligible in most cases, high frequencies corresponding to strong magnitude variations in the region of interest may corrupt the filtered k-space data. Conclusion
This
study demonstrates the feasibility of directly reconstructing elastograms from k-space
data, without prior phase image reconstruction, while circumventing the
delicate step of phase unwrapping. Despite its limitations, this method is well
suited for applications requiring fast update rate of MRE information, and it may
lead to alternative ways of estimating biomechanical properties in the future. Ongoing
work focuses on using this method with multi-channel arrays and undersampled
k-space raw data.Acknowledgements
This work
was partly funded by the French state funds managed by the ANR (within the
Investissements d’Avenir programme for the Labex CAMI); Grant number:
ANR-11-LABX-0004, and the IHU Strasbourg; Grant number: ANR-10-IAHU-02.
References
1. Chen J, Woodrum DA, Glaser KJ, et al. R Assessment
of in vivo laser ablation using MR elastography with an inertial driver. Magn
Reson Med. 2014;72:59–67.
2. Corbin N, Vappou J, Breton E, et al. Interventional MR elastography for MRI-guided
percutaneous procedures. Magn Reson Med. 2016;75:1110–8.
3. Corbin N, Breton E,
Mathelin de M , Vappou J. K-space data processing for magnetic resonance
elastography (MRE). Magn Reson Mater Phys Biol Med. 2016; Published online.DOI
10.1007/s10334-016-0594-8
4. Colton D, Kress R
(2013) Inverse Acoustic and Electromagnetic Scattering Theory. Springer New
York, New York, NY
5. Manduca A,
Muthupillai R, Rossman PJ, Greenleaf JF, Ehman RL (1996) Image analysis for
magnetic resonance elastography. In: Proceedings of the IEEE International
Conference on Engineering in Medicine and Biology Society, Amsterdam, The
Netherlands, pp 756-757
6. Barnhill E, Kennedy
P, Johnson CL, et al. Real-time 4D phase unwrapping applied to magnetic
resonance elastography. Magn Reson Med. 2014;73:2321-31.
7. Wang H, Weaver JB,
Perreard II, et al. A three-dimensional quality-guided phase unwrapping method
for MR elastography. Phys Med Biol. 2011;56:3935–52.