The presented study explores the capability of high resolution functional MRI (fMRI) at 9.4 Tesla to study functional changes in the primary visual cortex and the human thalamus during rest and natural picture viewing. We found increased intrinsic thalamic connectivity during both eyes open (EO) and eyes closed (EC) condition in the viewing task compared to rest.
fMRI Acquisition: The data acquisition was performed at 9.4 T Siemens (Erlangen, Germany). A modified distortion corrected EPI sequence with 22 slices, TR of 2 sec., 0.9 mm isotropic resolution, and 20 scans were acquired covering the thalamus and part of visual cortex in 6 right-handed male subjects (age 26-34 years).
rsfMRI and Task: First, a rsfMRI session was performed under EC condition (acquisition time 6.73 min). The consecutive visual task last for one minute and contained different 12 natural landscape pictures each appearing for 5 second. The visual task started with EC condition, and the volunteers were instructed by the inflation of an air balloon in their right hand to open the eyes and to close their eyes at the end of the block (s. Fig. 1). In total 3 blocks of EC and 3 blocks EO were acquired in the visual task. The task paradigm was designed by using the Presentation software®.
fMRI Analysis: fMRI data were distortion and motion corrected. A visual inspection of the motion correction data was done, and smoothing with a 3 mm kernel was applied. Skull extraction was performed using the Mean EPI image mask to remove voxels outside the brain. The GLM Bayesian-I model was used to calculate the task activation maps (s. Fig. 2).
ICA Analysis: 29 sub-compartments in both thalami were obtained using a probabilistic-ICA16. Session specific ICA parcellations reveal intrinsic spatio-temporal correlations but also variability in their spatial configuration and location during different conditions (s. Fig. 3). Session-specific parcellated (nodes x nodes) time course matrices were used for functional connectivity analysis (s. Fig. 3). The session-specific sets of node time series were calculated using dual regression of the resting state ICA clusters to calculate network consistency, hierarchy and pairwise causality using FSL (s. Fig. 4).
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