In this work, we developed a post processing framework to generate multi-contrast images from a single three dimensional MR scan of multi-echo gradient echo sequence, which can alleviate the registration problem and further improve the scan efficiency with a total scan time of 3min22sec for carotid atherosclerosis imaging. The initial experiments has demonstrated its feasibility for vessel wall delineation and its potential for plaque component characterization.
MR imaging
All of the subjects including 3 healthy volunteers and 3 patients were scanned at Philips Achieva TX 3.0T MR scanner. The scan parameters for three dimensional (3D) multi-echo gradient echo sequence include FA = 15, TE1/delta TE/TR = 3.9/3.5/30ms, 5 echoes, FOV = 200x200x54mm3, resolution = 0.6x0.6x2.0mm3, water excitation RF pulse for fat signal suppression and an overall scan time of 3min22sec. In addition, the conventional two dimensional (2D) T1 and T2 weighted turbo spin echo (TSE) carotid VWI were applied as a reference for plaque component characterization with FOV = 140x140x32mm3, resolution = 0.6x0.6x2.0mm3, TE/TR = 10/800ms (for T1 TSE), TE/TR = 50/4000ms (for T2 TSE) and the total scan time of 5min7sec (for T1 TSE) and 2min40sec (for T2 TSE).
Image post processing
3 different image contrast datasets can be derived from the acquired single 3D volume dataset, including a bright blood T1 weighted image, a black blood R2* map and a susceptibility map. The T1 weighted image and R2* map were estimated from the multi-echo magnitude image datasets using the nonlinear least square fitting for the mono exponential T2* decay model and the susceptibility map was derived from the multi-echo phase image datasets via fieldmap estimation8 and total field inversion9 with projection onto dipole field (PDF) regularization10 for background field removal.
1. Yuan C, Mitsumori LM, Beach KW, et al. Carotid atherosclerotic plaque: noninvasive MR characterization and identification of vulnerable lesions. Radiology. 2001;221(2):285-299.
2. Fan Z, Wei Y, Xie Y, et al. Multi-contrast atherosclerosis characterization (MATCH) of carotid plaque with a single 5-min scan: technical development and clinical feasibility. Journal of Cardiovascular Magnetic Resonance. 2014;16(1):1195-1197.
3. Chen S, Zhou Z, Chen H, et al. 3D Large Coverage Atherosclerosis Plaque Assessment within Single Scan (APASS): Preliminary Application in Carotid Artery and Femoral Artery. ISMRM 2015, p2654.
4. Luo J, Jagadeesan BD, Cross AH, et al. Gradient echo plural contrast imaging--signal model and derived contrasts: T2*, T1, phase, SWI, T1f, FST2*and T2*-SWI. Neuroimage. 2012;60(2):1073-1082.
5. Yang Q, Liu J, Barnes SR, et al. Imaging the vessel wall in major peripheral arteries using susceptibility-weighted imaging. J Magn Reson Imaging. 2009;30(2):357-65.
6. Liu Q, Fan Z, Yang Q, et al. Peripheral arterial wall imaging using contrast-enhanced, susceptibility-weighted phase imaging. J Comput Assist Tomogr. 2012;36(1):77-82.
7. Wang C, Liu S, Buch S, et al. Quantitative Susceptibility Mapping of Atherosclerosis in Carotid Arteries. ISMRM 2016, p2552.
8. Liu T, Wisnieff C, Lou M, et al. Nonlinear formulation of the magnetic field to source relationship for robust quantitative susceptibility mapping. Magn Reson Med. 2013;69(2):467-476.
9. Liu Z, Kee Y, Zhou D, et al. Preconditioned total field inversion (TFI) method for quantitative susceptibility mapping. Magn Reson Med. 2016. Epub.
10. Liu T, Khalidov I, de Rochefort L, et al. A novel background field removal method for MRI using projection onto dipole fields (PDF). NMR Biomed. 2011;24(9):1129-1136.