We investigate the potential of a technique to automatize quantification of neuronal damage from T1-weighted MR scans in multiple sclerosis patients. T1 hypointense component measures in the deep nuclei are derived from 40 MPRAGE scans (21 relapsing-remitting MS and 19 age-matched controls) through combined brain tissue classification and atlas-based segmentation algorithms. Our analysis shows that these automated measures are significantly lower in the thalamus and putamen of MS patients, which is in line with previously reported loss of structure in these regions.
21 RR-MS patients and 19 age-matched normal volunteers underwent a 3D magnetization-prepared rapid gradient echo acquisition (MPRAGE) performed on a 3T MR scanner (MAGNETOM Verio, Siemens Healthcare, Erlangen, Germany): TR/TI: 2300/900 ms, voxel-size: 1.0x1.0x1.2 mm3, iPAT=2, acquisition time: 5:12 min, and a 2D FLAIR acquisition (TR/TI/TE= 9000/2500/95 ms, voxel size 1x1 mm², slice thickness: 2.5 mm). All scans were performed with a commercial 32-channel head coil.
We used the MorphoBox prototype [4] to segment and estimated the volumes of the following DGM nuclei: thalamus, caudate, putamen and pallidum. Brain tissue classification was performed on a skull-stripped brain by means of a template-free algorithm fitting a 5-class Gaussian mixture model roughly representing ventricular CSF, sulcal CSF, cortical GM, deep GM, and WM. Model fitting was carried out using a variational expectation-maximization (VEM) algorithm [4] which outputs five a posteriori probability maps. They were subsequently converted into three maps corresponding to CSF, GM and WM by combining the ventricular with sulcal CSF maps and the cortical with deep GM maps. The T1 hypointense component in each DGM was computed by summing up GM a posteriori probabilities over each DGM mask and normalizing them by their total volume.
A bilateral two-sample t-test with unequal variances is used for comparing measurements obtained in MS patients and normal subjects, and a p-value < 0.05 is considered as statistically significant.
No lesion is observed on the FLAIR images in deep gray matter nuclei of the patients. As shown in Figure 1, the T1 hypointense component is found to be significantly lower in MS patients in the thalamus (48.36 vs 67.63%, p=0.0005), caudate (90 .10 vs 94.07%, p=0.02), putamen (65.81 vs 77.73%, p=0.0043), and pallidum (8.67 vs 12.71%, p=0.048).
Normalized volumes (expressed in % of total intracranial volume) of the patients are significantly reduced in the thalamus (0.909 vs 0.995, p=0.006) and the total brain white matter (28.24 vs 30.45, p=0.013). The observed reductions do not reach significance in the caudate (0.625 vs 0.654, p=0.3), the putamen (0.926 vs 0.978, p=0.11), and the pallidum (0,257 vs 0.276, p=0.088).
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