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Deformable Registration of In Vivo Human Spine Magnetic Resonance Imaging Using Scale Invariant Feature Transform (SIFT) Algorithm
Dong-Hoon Lee1,2, Do-Wan Lee3,4,5, Yong Hyun Chung2, and Bong-Soo Han2

1Brain and Mind Centre, University of Sydney, Sydney, Australia, 2Department of Radiological Science, Yonsei University, Wonju, Korea, Republic of, 3Ewha Brain Institute, Ewha Womans University, Seoul, Korea, Republic of, 4Department of Biomedical Engineering, The Catholic University of Korea College of Medicine, Seoul, Korea, Republic of, 5Research Institute of Biomedical Engineering, The Catholic University of Korea, Seoul, Korea, Republic of

Synopsis

Deformable registration process for in vivo human spine MR images can provide the crucial information to investigate the diagnostic performance and treatment effects of pathologies. Here, based on the scale invariant feature transform (SIFT) algorithm, we attempted to evaluate the deformable registration process for spine images, and compared with commercially mounted algorithm in MRI system. The results qualitatively and quantitatively showed fine results, and clearly showed the reproducibility of the use of SIFT algorithm compared with commercially mounted stitching algorithm on MRI system. Our approach can be helpful for the extension of other medical imaging modalities for image deformable registration.

Introduction

Diagnostic evaluation of in vivo human spine structures (cervical, thoracic, and lumbar; called as C-T-L) is important for assessing pathologies using crucial imaging tool, particularly MRI. However, it is difficult to acquire the whole C-T-L spine image at once due to the limited field-of-view (FOV) of receiver coil system.1-3 Thus, deformable image registration method that made a single image through the separate images was widely used to perform the combining images, effectively.3,4 In this study, we applied Scale Invariant Features Transform (SIFT) algorithm to C-T-L spine MR image for deformable registration of them to investigate the feasibility and reproducibility.

Method

MRI data acquisition: Five male healthy subjects (mean age ± standard deviation: 26 ± 2.1 years) participated in this study. Each part of C-T-L spine images were acquired with Philips 3.0 T MRI system (Achieva 3.0 T; Philips Medical Systems, The Best, Netherlands) using FSE sequence (image parameters: TE/TR=120/3,000 ms, FOV=288 mm2, ETL=27, matrix size=576 × 576, slice thickness=4.4 mm, and number of slices=5). Data processing: The SIFT algorithm was used to detect the feature points created from an edge or corner of an object for vector calculation. The SIFT algorithm was applied in five steps; detection of the extrema in scale-space, keypoint localization, keypoint orientation assignment, Generation of keypoint descriptor and Point matching process.5 In the case of multi-slice images, the point selection is only performed at the most central slice among them, and other slices are combined with the selected point at the most central slice to register images. For quantitative comparisons between the registered images using SIFT algorithm and commercially mounted algorithm in MRI system, we performed Bland-Altman analysis,6 and calculated Normalized Mean Square Error (NMSE) and Pearson’s correlation coefficients. These quantitative analysis procedures performed with images from MRI system. Note that there is no gold standard or ground truth for stitching image results, we assumed that the registered images from commercial MRI system as a reference images for quantitative analysis in this study.

Results and Discussion

Fig.1 shows the comparative results, which are sagittal and coronal section images from representative subject, between the use of registered results with SIFT algorithm (A and C) and the use of deformable registration algorithm within the commercial MRI system (B and D). The calculated NMSE values from all subjects are represented 1.74×10−4 ± 3.68×10−5 (sagittal) and 1.85×10−4 ± 2.92×10−5 (coronal). For statistical results performed with paired t-test between the use of the SIFT algorithm and commercially mounted algorithm, note that there is no significant differences in sagittal or coronal image sections. (all p > 0.05). Fig.2 shows the quantitative comparison of the mean signal intensities from whole registered images with SIFT and commercially mounted algorithms in each subject’s image slices (A and B), and Bland-Altman analysis results (C and D). Notably, the calculated Pearson's coefficient values (r) represent high correlations between two stitched results performed with SIFT algorithm and commercially mounted algorithm (r = 0.88; p < 0.001 for sagittal section; r = 0.86; p < 0.001 for coronal section). In addition, the signal intensities comparison results, which are located close to the y = x line, and high coefficients of determination values (R2 = 0.95 for sagittal section; R2 = 0.93 for coronal section) also clearly indicate that the feasibility and reliability for the use of SIFT algorithm to spine MR image deformable registration process. For the Bland-Altman analysis results, the mean differences and standard deviations are -104.48 ± 280.88 A.U., and -187.79 ± 315.78 A.U. for sagittal and coronal section results, respectively. The all differences between SIFT algorithm and commercially mounted algorithm are within the ranges of ±1.96 times the standard deviations of the means, and there are no significant biases at the sagittal and coronal section results.

Conclusions

We provided preliminary findings of the feasibility and the validity of the SIFT algorithm application to deformable registration for in vivo human spine images. As shown in the results, the algorithm could be performed well in the MR spine images. We believe that our approach could be extended to the other image deformable registration fields such as whole-body MRIs and other imaging modalities as well, and could be helpful for clinical applications and diagnosis improvements.

Acknowledgements

No acknowledgement found.

References

1. Filippi CG, Andrews T, Gonyea JV, Linnell G, Cauley KA. Magnetic resonance diffusion tensor imaging and tractography of the lower spinal cord: application to diastematomyelia and tethered cord. Eur Radiol. 2010; 20: 2194.

2. Nair G, Carew JD, Usher S, Lu D, Hu XP, Benatar M. Diffusion tensor imaging reveals regional differences in the cervical spinal cord in amyotrophic lateral sclerosis. Neuroimage. 2010; 53: 576.

3. Wang D, Kong Y, Shi L, Ahuja AA, Cheng JC, Chu WC. Fully automatic stitching of diffusion tensor images in spinal cord. J Neurosci Methods. 2012; 209: 371.

4. Dzyubachyk O, Lelieveldt BP, Blaas J, Reijnierse M, Webb A, van der Geest RJ. Automated algorithm for reconstruction of the complete spine from multistation 7T MR data. Magn Reson Med. 2013; 69: 1777.

5. Zhang X, Zhu Y, Li C, Zhao J, Li G. SIFT algorithm-based 3D pose estimation of femur. Biomed Mater Eng. 2014; 24: 2847.

6. Martin Bland J, Altman D. Statistical methods for assessing agreement between two methods of clinical measurement. Lancet 1986; 327: 307–310.

Figures

Fig. 1. A representative subject’s deformable registration results for the use of SIFT algorithm (A; sagittal section and C; coronal section) and the use of commercially mounted algorithm on the MRI system (B; sagittal section and D; coronal section).

Fig. 2. Quantitative comparison of signal intensities between the results using SIFT algorithm and commercially mounted algorithm for sagittal section (A) and coronal section (B). The red sold line represents the correlations and the linear regression of all values. The Pearson’s coefficient (r) and p values are provided for each image sections. (C) and (D) indicate the Bland-Altman plots of signal intensities acquired from the results using SIFT algorithm, compared with those by commercial mounted algorithm, respectively. The black solid line is the mean of the difference and the dotted lines bracket ±1.96 times the standard deviations of the means.

Proc. Intl. Soc. Mag. Reson. Med. 25 (2017)
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