The myocardium consists of a complex 3-dimensional (3D) microstructure has been shown to be perturbed in the presence of myocardial ischemia. Recently, diffusion tensor magnetic resonance imaging (DT-CMR) was introduced which can characterize the 3D tissue microstructure in intact myocardium. However, past histologic validation of DTI has been limited since traditional pathology allows only 2D optical microscopy after potentially destructive tissue sectioning. We present a novel approach to validate the derivation of the myocardial fiber orientation (MFO) using DT-CMR with 3D histology using a non-destructive, transparent-tissue preparation technique (CLARITY). Results indicate MFO derived from 3D histology and DT-CMR are strongly concordant.
Validation of the approach was performed ex vivo in normal (n=7) and ischemic (n=8) mouse hearts after fixation. All hearts were scanned with a gold standard DT-CMR (single spin echo, 12 directions, b=1000 s/mm2, TR=8750ms, TE=36ms, NEX=5, 125x125x300um3, scan time=14hrs) sequence on a 9.4T Bruker (BioSpec 94/20 USR, Bruker Biospin) scanner. After CMR, the hearts were fixed and processed with CLARITY. After 1 month of CLARITY, 3D optical fluorescence imaging (638nm wavelength, 4.4x4.4x7.8um3, 5x objective lens) of the hearts were performed on an optical system (Light Sheet Z1, Carl Zeiss Microscopy Co) covering the entire left ventricle (LV).
DT-CMR images were processed using custom software based off DIPY (www.dipy.org) to estimate voxelwise self-diffusion tensors with primary eigenvectors assumed to be parallel to MFO. Raw optical images were processed with a 3D structural tensor analysis [5] to derive voxelwise MFO. Helix angle (HA) maps and HA transmurality (HAT) were calculated for both imaging modalities. HAT was calculated at 100 radial segments in the short axis plane for each slice. Comparison between DT-CMR and 3D optical microscopy was performed after down-sampling and co-registration of the calculated HA maps. Segment and global HAT comparisons between modalities for each subject were carried out.
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