Xucheng Zhu1, Mariya Doneva2, Peder E.Z. Larson1,3, and Michael Lustig1,4
1Bioengineering, UC Berkeley-UCSF Graduate Program in Bioengineering, San Francisco, CA, United States, 2Philips Research Europe, Hamburg, Germany, 3Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United States, 4Department of Electrical Engineering and Computer Sciences, UC Berkeley, Berkeley, CA, United States
Synopsis
Gradient
delay often leads to misalignment of k-space data, which induces artifacts on
reconstructed images. As many self-gated motion correction methods largely
depend on central k-space data, misalignment might affect motion state
estimation and reconstruction. In order to acquire robust motion states and
improve motion resolved reconstruction, we propose a workflow incorporating
gradient delay correction, robust motion extraction, and motion resolved
reconstruction. We tested our method on in vivo volunteer data, and demonstrate
the improvement over a reconstruction that does not account for these delays.
Purpose
The
3D stack-of-stars trajectory acquisition is widely used in liver and abdominal
imaging applications because of its relative insensitivity to object motion compared
with Cartesian trajectory, as well as its higher acquisition efficiency
compared to 3D radial trajectory. However, one drawback compared to a Cartesian
acquisition is its sensitivity gradient delays. Due to this problem, the
acquired k-space data might not perfectly match the designed trajectory. As
self-gated motion signals are derived from the central k-space data, it would
be vulnerable to the induced k-space misalignment. More importantly, gradient
delays affect not only the image quality but also the accuracy of motion state
estimation.
Several
approaches for correcting the gradient delay have been proposed in the past. One
method is to measure the exact k-space location by using pre-scan or extra
hardware
1,2. Research
5 shows that gradient delay might
vary over time, some pre-calibration method might not estimate the correct
delay. Another way is to calculate the delay by using acquired data
3,4,9 without
extra calibration. Block’s work
4, used the spokes acquired at
opposing orientations to estimate the gradient delay for x and y direction,
then estimated delay for different direction spokes based on these two
estimations. In this work, based on similar idea from Block’s work, we extended
it to 3D trajectory. In addition, we estimated gradients delays for each
acquisition direction instead of linear combining x and y delay components.
Methods
We
assume that the gradient delay-induced k-space misalignment in the opposing
orientation acquisitions were the same or similar. The correction process work
flow is shown in Figure 1. Firstly, opposing orientation acquisition spokes are
paired and transformed in projection domain through a Fourier transform. Then,
phase differences between paired spokes are calculated and transformed back to k-space.
The shift of peak from the center is the compensated phase for the paired
acquisition spokes. To reduce the noise effect and error measurement, low pass
filter is applied after the correction shift.
An adult volunteer
was scanned under IRB approval using a 3D T1-FFE sequence with a free-breathing
acquisition (TR/TE 4.35 ms 1.20ms, voxel resolution 1 x 1 x 1.5mm, FOV 40 x 40 x 12.5cm). The sequence was implemented on a 3T MR system (Philips Healthcare) equipped
with a 16-channel torso coil. Data processing and reconstruction steps are shown
in Figure 2. Firstly, the proposed delay correction process was applied to the
raw data. Then, central k-space data were selected to calculate the self-gated
motion signal. After that, FLICM (fuzzy local information C-Means)
7
segmentation method is used to extract the motion state curve and data are evenly
binned to 4 motion states based on the curve position. Finally, motion resolved
images are reconstructed by using iterative reconstruction with a total
variation constraint along motion states, similar to XD-GRASP framework
6
via BART (Berkeley Advanced Reconstruction Toolbox)
8.
Results
Figure
3 shows the self-gated signals calculated from the raw data before and after
correcting the central k-space data for gradient delay. The proposed method removes
most of the intensity inhomogeneity in the self-gated signals caused by
gradient delay. Then the respiration
motion can be easily delineated with the proposed segmentation method with any
intensity inhomogeneity correction.
Figure
4 shows the motion binning signals calculated from the segmentation results
based on both corrected and uncorrected data. The arrows point to errors in the
binning signal due to the uncorrected gradient delay that cause a mismatch
between the data and its motion state. After the gradient delay correction, the
binning is largely improved.
Figure
5 shows the reconstruction results with and without gradient delay correction. The
proposed method improves the sharpness of the liver and some vessels inside
liver because the binning process groups the motion corrupted data in the
correct motion state. In addition, most of the intensity inhomogeneity and streaking
artifacts caused by gradient delay are removed after the correction.
Conclusion
and Discussion
In
this work, we proposed a workflow to improve motion correction by correcting the
gradient delay induced k-space misalignment. From the result, we found that
proposed method improved both self-gated motion estimation and the overall reconstruction
image quality. This workflow could also be extended to other applications using
the 3D stack-of-star and conventional 2D radial trajectory.Acknowledgements
Authors would like to thank Wenwen Jiang, Jonathan Tamir, and Peng Cao for their comments and suggestions.References
[1] Peters, Dana
C., J. Andrew Derbyshire, and Elliot R. McVeigh. "Centering the projection
reconstruction trajectory: reducing gradient delay errors." Magnetic
resonance in medicine 50.1 (2003): 1-6.
[2] Speier, P., and
F. Trautwein. "Robust radial imaging with predetermined isotropic gradient
delay correction." Proceedings of the 14th Annual Meeting of ISMRM,
Seattle, Washington, USA. 2006.
[3] Block, K. T.,
and M. Uecker. "Simple method for adaptive gradient-delay compensation in
radial MRI." Proceedings of the 19th Annual Meeting of ISMRM, Montreal,
Canada. 2011.
[4] Jiang, W., P.E.Z. Larson, M. Lustig. Simultaneous Estimation of
Auto-calibration Data and Gradient Delays in non-Cartesian Parallel MRI using
Low-rank Constraints.
[5]
Brodsky, Ethan K., Alexey
A. Samsonov, and Walter F. Block. "Characterizing and correcting gradient
errors in non-cartesian imaging: Are gradient errors
linear time-invariant (LTI)?." Magnetic
resonance in medicine 62.6 (2009): 1466-1476.
[6] Feng, Li, et
al. "XD-GRASP: Golden-angle radial MRI with reconstruction of
extra motion-state dimensions using compressed
sensing." Magnetic resonance in medicine 75.2 (2016): 775-788.
[7] Krinidis, Stelios, and Vassilios
Chatzis. "A robust fuzzy local information C-means clustering
algorithm." IEEE Transactions on Image Processing 19.5 (2010): 1328-1337.
[8] Uecker, Martin,
et al. "Berkeley advanced reconstruction toolbox." Proc. Intl.
Soc. Mag. Reson. Med. Vol. 23. 2015.
[9] Wech, Tobias, et al. "Using self-consistency for an
iterative trajectory adjustment (SCITA)." Magnetic resonance in
medicine 73.3 (2015): 1151-1157.