Arttu Peuna1,2,3, Joonas Hekkala1,3, Marianne Haapea1,2, Jana Podlipska1,3, Simo Saarakkala1,2,3, Miika T Nieminen1,2,3, and Eveliina Lammentausta1,2
1Medical Research Center, University of Oulu and Oulu University Hospital, Oulu, Finland, 2Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland, 3Research group of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland
Synopsis
Texture analysis methods based on gray level
co-occurrence matrices can be optimized to probe the spatial information from
knee MR T2 maps and of the changes caused by osteoarthritis. Curvature of
the cartilage surfaces and relatively low resolution in relation to cartilage
thickness set special requirements for texture analysis tools. Here we report
an optimized analysis tool with customized point-wise offset angle and endpoint
extrapolation for cartilage texture analysis. Method provides excellent
performance compared to traditional texture analysis implementation.Introduction:
Magnetic resonance imaging (MRI) is safe and versatile
tool to acquire radiological data from the knee joint. While clinical imaging sequences are able to
provide excellent soft tissue contrast and enable identification of trauma and
gross degeneration, they are not sensitive enough for characterization of changes
occurring before clinical onset of OA. Quantitative MRI (qMRI) parameters have
proven promising in assessing cartilage quality1 while gray level
co-occurrence matrices (GLCM)2 can be used to probe the spatial
correspondences of the changes caused by OA, and thus, extract underlying
information from T2 maps.
Implementations for calculating texture are available
either free of charge, such as MaZda3, or in commercial software,
such as the Image Processing toolbox of MATLAB (MathWorks, Natick, MA), but
none of them is addressing the special requirements for cartilage, namely the
curvature of the analyzed surfaces and relatively low resolution in relation to
cartilage thickness. Therefore, customized optimization of texture analysis is necessary.
In this abstract, we present an angle dependent
extrapolative method for improved GLCM analysis.
Materials
and methods:
64 asymptomatic volunteers (38 female, mean age 54.9
years (standard deviation, SD 13.9), body mass index 24.9 kg/m2 (SD 3.2)) and
80 symptomatic patients (49 female, 59.9 years (SD 7.7), 29.0 kg/m2 (SD 4.29))
were recruited with the permission from the local ethics committee. A total of
80 asymptomatic volunteers were recruited via newspaper advertisement, while 16
had to be excluded due to MRI OA findings. Patients were selected from the
hospital registry based on long-term non-specific knee pain or referring to
knee replacement surgery. Exclusion criterion included trauma, rheumatoid
diseases, previous knee surgery, or other underlying medical conditions that
could affect the knee joint. Subjects were scanned on 3T Siemens Skyra (Siemens
Healthcare, Erlangen, Germany). T2 relaxation time mapping was performed with a
multi-slice multi-echo spin echo sequence (TR=1680ms, TE’s(5)=13.8…69.0ms,
ETL=5, FOV=160x160mm, matrix=384x384, thickness=3 mm).
T2 maps were processed with an in-house developed
segmentation and analysis tool (MATLAB, Mathworks Inc., Natick, MA). Gray level
co-occurrence matrix (GLCM) texture features were calculated in parallel
orientation (along the bone-cartilage interface direction) for each region of
interest (ROI). Instead of determining the offset along x-y axis or flattening
the cartilage4, we developed an approach where the offset for each
pixel is changing along the curve of the cartilage: The offset is calculated
from the perpendicular gradient of the cartilage-bone interface (Fig 1b). Next
each pixel within the cartilage is assumed with the angle of the closest value
along the gradient line. With the limited resolution of T2 maps, the
orientation vectors tend to point to in-between pixels (Fig 1c). To overcome
this limitation, we performed extrapolative soft-contour analysis for the
offset endpoint (Fig 1d). This would allow realistic endpoint values for freely
varying offset vectors.
Results:
Compared to preliminary results
5, the
improved algorithm shows higher sensitivity and smaller intraparameter variability
(Fig 2). For the studied parameters, the improved algorithm provides smaller
p-values than the conventional approach. Homogeneity, difference
entropy and information measure of correlation display upper and
lower quartiles closer to the median, which suggest that the parameters provide
more consistent results between different subjects. With the conventional
algorithm, energy did not show statistically significant differences
between the subject groups, while with the improved algorithm both femoral
regions show significant difference between control and patient group.
Furthermore, when studied regions were compared for each parameter, the new
algorithm maintains more stable level between the regions: With the
conventional approach, the regions, especially the medial central femur, had a
different baseline level that made comparison between ROIs impractical. With
the improved algorithm, though, the parameter levels are consistent and results
are more comparable and systematic.
Conclusion:
Improved
texture analysis algorithm displays excellent performance in discerning
symptomatic patients and asymptomatic volunteers. Point-wise offset angle with
endpoint extrapolation allowed us to get realistic results from texture
analysis even while the resolution of the T2 maps is limited and only
eight-pixel neighborhood is originally available for use. The improved
algorithm resulted in smaller p-values, smaller variability and more systematic
baseline in overall.
Acknowledgements
No acknowledgement found.References
1. F. Eckstein et al., "Quantitative MRI of cartilage and bone: degenerative changes in osteoarthritis," NRM in Biomedicine, vol. 19, pp. 822-854, 2006.
2. R. M. Haralick et al., "Textural Features for Image Classification," IEEE Transactions on Systems, Man, and Cybernetics, vol. 3, no. 6, pp. 610-621, 1973.
3. P. M. Szczypinski et al., ”MaZda—A software package for image texture analysis,” Computer Methods and Programs in Biomedicine, vol. 94, pp. 66-76, 2009.
4. J. Carballido-Gamio, G. B. Joseph, J. A. Lynch, T. M. Link and S. Majumdar, "Longitudinal Analysis of MRI T2 Knee Cartilage Laminar Organization in a Subset of Patients From the Osteoarthritis Initiative: A Texture Approach," Magnetic Resonance in Medicine, vol. 65, pp. 1184-1194, 2011.
5. A. Peuna, J. Hekkala, M. Haapea, J. Podlipska, M. T. Nieminen, S. Saarakkala and E. Lammentausta, "Gray level co-occurence matrix approach for T2 analysis of cartilage in knee osteoarthritis," Proceedings of the International Society for Magnetic Resonance in Medicine, Toronto, 2015.