Variable angle GLCM analysis for T2 maps of osteoarthritic knee cartilage with endpoint analysis: Oulu Knee Osteoarthritis study
Arttu Peuna1,2,3, Joonas Hekkala1,3, Marianne Haapea1,2, Jana Podlipska1,3, Simo Saarakkala1,2,3, Miika T Nieminen1,2,3, and Eveliina Lammentausta1,2

1Medical Research Center, University of Oulu and Oulu University Hospital, Oulu, Finland, 2Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland, 3Research group of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland

Synopsis

Texture analysis methods based on gray level co-occurrence matrices can be optimized to probe the spatial information from knee MR T2 maps and of the changes caused by osteoarthritis. Curvature of the cartilage surfaces and relatively low resolution in relation to cartilage thickness set special requirements for texture analysis tools. Here we report an optimized analysis tool with customized point-wise offset angle and endpoint extrapolation for cartilage texture analysis. Method provides excellent performance compared to traditional texture analysis implementation.

Introduction:

Magnetic resonance imaging (MRI) is safe and versatile tool to acquire radiological data from the knee joint. While clinical imaging sequences are able to provide excellent soft tissue contrast and enable identification of trauma and gross degeneration, they are not sensitive enough for characterization of changes occurring before clinical onset of OA. Quantitative MRI (qMRI) parameters have proven promising in assessing cartilage quality1 while gray level co-occurrence matrices (GLCM)2 can be used to probe the spatial correspondences of the changes caused by OA, and thus, extract underlying information from T2 maps.

Implementations for calculating texture are available either free of charge, such as MaZda3, or in commercial software, such as the Image Processing toolbox of MATLAB (MathWorks, Natick, MA), but none of them is addressing the special requirements for cartilage, namely the curvature of the analyzed surfaces and relatively low resolution in relation to cartilage thickness. Therefore, customized optimization of texture analysis is necessary.

In this abstract, we present an angle dependent extrapolative method for improved GLCM analysis.

Materials and methods:

64 asymptomatic volunteers (38 female, mean age 54.9 years (standard deviation, SD 13.9), body mass index 24.9 kg/m2 (SD 3.2)) and 80 symptomatic patients (49 female, 59.9 years (SD 7.7), 29.0 kg/m2 (SD 4.29)) were recruited with the permission from the local ethics committee. A total of 80 asymptomatic volunteers were recruited via newspaper advertisement, while 16 had to be excluded due to MRI OA findings. Patients were selected from the hospital registry based on long-term non-specific knee pain or referring to knee replacement surgery. Exclusion criterion included trauma, rheumatoid diseases, previous knee surgery, or other underlying medical conditions that could affect the knee joint. Subjects were scanned on 3T Siemens Skyra (Siemens Healthcare, Erlangen, Germany). T2 relaxation time mapping was performed with a multi-slice multi-echo spin echo sequence (TR=1680ms, TE’s(5)=13.8…69.0ms, ETL=5, FOV=160x160mm, matrix=384x384, thickness=3 mm).

T2 maps were processed with an in-house developed segmentation and analysis tool (MATLAB, Mathworks Inc., Natick, MA). Gray level co-occurrence matrix (GLCM) texture features were calculated in parallel orientation (along the bone-cartilage interface direction) for each region of interest (ROI). Instead of determining the offset along x-y axis or flattening the cartilage4, we developed an approach where the offset for each pixel is changing along the curve of the cartilage: The offset is calculated from the perpendicular gradient of the cartilage-bone interface (Fig 1b). Next each pixel within the cartilage is assumed with the angle of the closest value along the gradient line. With the limited resolution of T2 maps, the orientation vectors tend to point to in-between pixels (Fig 1c). To overcome this limitation, we performed extrapolative soft-contour analysis for the offset endpoint (Fig 1d). This would allow realistic endpoint values for freely varying offset vectors.

Results:

Compared to preliminary results5, the improved algorithm shows higher sensitivity and smaller intraparameter variability (Fig 2). For the studied parameters, the improved algorithm provides smaller p-values than the conventional approach. Homogeneity, difference entropy and information measure of correlation display upper and lower quartiles closer to the median, which suggest that the parameters provide more consistent results between different subjects. With the conventional algorithm, energy did not show statistically significant differences between the subject groups, while with the improved algorithm both femoral regions show significant difference between control and patient group. Furthermore, when studied regions were compared for each parameter, the new algorithm maintains more stable level between the regions: With the conventional approach, the regions, especially the medial central femur, had a different baseline level that made comparison between ROIs impractical. With the improved algorithm, though, the parameter levels are consistent and results are more comparable and systematic.

Conclusion:

Improved texture analysis algorithm displays excellent performance in discerning symptomatic patients and asymptomatic volunteers. Point-wise offset angle with endpoint extrapolation allowed us to get realistic results from texture analysis even while the resolution of the T2 maps is limited and only eight-pixel neighborhood is originally available for use. The improved algorithm resulted in smaller p-values, smaller variability and more systematic baseline in overall.

Acknowledgements

No acknowledgement found.

References

1. F. Eckstein et al., "Quantitative MRI of cartilage and bone: degenerative changes in osteoarthritis," NRM in Biomedicine, vol. 19, pp. 822-854, 2006.

2. R. M. Haralick et al., "Textural Features for Image Classification," IEEE Transactions on Systems, Man, and Cybernetics, vol. 3, no. 6, pp. 610-621, 1973.

3. P. M. Szczypinski et al., ”MaZda—A software package for image texture analysis,” Computer Methods and Programs in Biomedicine, vol. 94, pp. 66-76, 2009.

4. J. Carballido-Gamio, G. B. Joseph, J. A. Lynch, T. M. Link and S. Majumdar, "Longitudinal Analysis of MRI T2 Knee Cartilage Laminar Organization in a Subset of Patients From the Osteoarthritis Initiative: A Texture Approach," Magnetic Resonance in Medicine, vol. 65, pp. 1184-1194, 2011.

5. A. Peuna, J. Hekkala, M. Haapea, J. Podlipska, M. T. Nieminen, S. Saarakkala and E. Lammentausta, "Gray level co-occurence matrix approach for T2 analysis of cartilage in knee osteoarthritis," Proceedings of the International Society for Magnetic Resonance in Medicine, Toronto, 2015.

Figures

Figure 1. Optimization schemes for cartilage texture analysis. a) Due to curvature, single orientation is not applicable. b) Orientation for starting points can be adjusted according to cartilage-bone interface. c) Orientation vectors tend to point to in-between pixels. d) With extrapolated soft-contour map, endpoint value can be estimated more accurately.

Figure 2. Conventional and improved texture analysis methods compared in medial central femur (mcF), lateral central femur (lcF), medial central tibia (mcT) and lateral central tibia (lcT). P-values < .05 denoted with * and p-values ≤ .001 with **.



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
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