Synopsis
When using the T2-relaxation under spin tagging (TRUST)
technique on non-compliant subjects, motion has an unknown effect on estimations
of cerebral oxygenation that are derived from an empirical mapping between T2 and blood oxygen
saturation. Incorporating low resolution 3D-EPI volume navigators into the TRUST pulse
sequence permits independent measurements of motion during scanning. We show
that for static scans vNav modules have only small effects on resulting venous blood
T2 estimates, that poor exponential goodness of fit is not a
sufficient indicator of motion, and that T2 is biased upwards with
increasing motion.Introduction
Using
T
2-relaxation under spin tagging (TRUST)
1–3 to measure cerebral oxygenation in
neonates has shown that subject motion affects blood signal isolation and has
unknown impact on venous oxygen saturation (SvO2) quantification. In TRUST, the
venous blood signal in the superior sagittal sinus (SSS) is isolated using a
spin tagging approach, an exponential fit is used to estimate T
2 from the
resulting signal, and an empirical calibration is used to map T
2 to venous
oxygen saturation. To quantify subject motion during TRUST scans, we
incorporated volume navigators (vNav)
4 into the TRUST sequence to retrospectively determine
the movements that occurred during the scan. We show that for static scans vNav
modules have only small effects on resulting venous blood T
2 estimates,
that poor exponential goodness of fit is not a sufficient indicator of motion,
and that blood T
2 is biased upwards with increasing motion.
Methods
vNav acquisition modules
4 were inserted into the TRUST
sequence (Figure 1). For offline registration not including the label shadow we
used the methods of McDaniel, et al:
5 volumes were co-registered and
motion parameters measured using the FSL FLIRT tool (cost function=correlation
ratio, DOF=6)
6 and custom Matlab scripts.
Translations were determined for a voxel centered on the SSS and motion score calculated.
4
For this pilot study with compliant subjects, three adults
(2 male, 1 female, mean age=21) were scanned with IRB approval on a Siemens Tim
Trio scanner. The TRUST image was positioned 25 mm above the confluence of the
sinuses perpendicular to the SSS with scan parameters: TE/TR=12/5000ms, T2
effective echo times (TE
eff)=0,18,36,72,144ms, resolution=3.4x3.4x5mm,
inversion time=1200ms, tagging width=100mm, tagging gap=25mm, 3 averages, total
acquisition=2:30. The subject was then instructed to move or remain still for
alternating TRUST+vNav scans. The three brightest voxels near the SSS were
averaged to give a signal intensity (S(TE
eff)) value for one TE
eff. Fitting
to S(TE
eff)=S
0exp(TE
eff*C) was performed by taking ln(S(TE
eff)) and then
performing a linear least squares fit. T
2,blood=1/(R
1,blood-C),
R
1,blood=0.62 [s
-1].
1 Goodness of fit was evaluated
based on the standard deviation of the residuals (SDR) of the fit.
Results
Simulations of the TRUST+vNav sequence using Bloch
simulation and TRUST signal equations
1 show that vNav modules cause
changes in T
2 smaller than same subject T
2 variance and SDR changes were smaller
than for typical in vivo fits. T
2 estimates from TRUST and TRUST+vNav sequences
demonstrate no significant difference in T
2 values (Table 1). vNavs track head
motion, with example motion trajectories for a quiescent and moving subject shown
in Figure 2. Figure 3 shows maximum motion score during the scan plotted
against SDR. Figure 4 shows the significant positive correlation between the
difference of estimated T
2 and mean baseline T
2 per subject, and maximum motion
score.
Discussion
vNavs have been well characterized and are suitable for
resolving translations of less than 0.5mm.
4 Due to the differences
between control and label acquisitions in TRUST, a small (<0.5 mm
translation at the SSS) jitter results from the registration between these
states for still subjects. Figure 2 shows the registration across all label acquisitions,
and future work will consider the motion during control and label states in parallel
since the venous blood signal isolation is affected by either. Figure 2 suggests good motion tracking using the vNavs. Previous work established that the failed
signal isolation resulting from movement between control and tag acquisitions
partly manifests itself as poor goodness of exponential fit.
1 Figure 3 suggests that though
this is largely true, goodness of fit as assessed by SDR cannot be used to
determine whether or not motion occurred. This is important both because of the
upward bias in T
2 estimates that results from motion (Figure 4) and
the estimation error in T
2 that grows larger with increased motion. We
hypothesize that the larger T
2 values with motion result from poor
venous blood signal isolation, meaning that tissue compartments with higher
intrinsic T
2 values (grey matter and cerebral spinal fluid) are
included in the assumed pure blood signal.
Future work will use the motion parameters—measured
independently from the T
2-fitting process—to perform retrospective motion
correction by rejecting or weighting S(TE
eff) values before performing the fit.
We will also explore the possibility that brain state changes
contribute to the upward bias in T2 when a subject is
instructed to move.
Conclusion
Motion causes an upward bias of venous blood T
2
estimates in the TRUST technique. During scans with poor subject compliance,
specifically during pediatric scans, independent motion monitoring, here
performed with vNavs, may be necessary.
Acknowledgements
Mark Vangel, Department of Radiology, MGH, for his help with statistical methods.
This publication was made possible by NIBIB-NIH grants 5T32EB1680,
R01EB017337, U01HD087211, and by NIH-NICHD grants 4R00HD074649-03, R21HD072505.
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