Ying Chen1, Song Chen1, Hui Liu2, Zhong Chen3, and Jianhui Zhong1,4
1Center for Brain Imaging Science and Technology, Zhejiang University, Hangzhou, China, People's Republic of, 2MR Collaboration Northeast Asia, Siemens Healthcare, Shanghai, China, People's Republic of, 3Department of Electronic Science, Xiamen University, Xiamen, China, People's Republic of, 4Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Zhejiang University, Hangzhou, China, People's Republic of
Synopsis
Single-shot
SPEN MRI is a technique capable of retaining the time efficiency of single-shot
EPI but with significantly reduced geometric distortions. Akin to EPI, the
phase inconsistency between even and odd echoes also result in Nyquist ghosts
in SPEN images. This work is to present a scheme with more reliable
performance than the previously reported Nyquist ghost correction method. Experimental results of human brains and in vivo rats show that the proposed method can remove ghosts
without introducing blurring, and unwarping procedures can be conducted on the ghost-corrected data for further distortion correction.Purpose
Single-shot
SPEN MRI is a technique capable of retaining the time efficiency of single-shot
EPI but with significantly reduced geometric distortions. Akin to EPI, the
phase inconsistency between even and odd echoes also results in Nyquist ghosts
in SPEN images. However, the characteristic of the SPEN signals provides the
convenience of obtaining two alias-free images directly from solely even and
odd echoes without additional reference scans. The phase difference of the two
images can thus be utilized to implement two-dimensional Nyquist ghost
correction. This work presents a scheme with more reliable
performance than the one previously reported
1. The phase difference map is utilized to correct the encoding matrix instead of
the SPEN signals, avoiding the modulation possibly introduced on
the profile during so-called back and forth transformation, and removing ghosts
without blurring the images.
Methods
The flowchart
of the proposed scheme is listed in Fig.1 with more explanations as follows.
1. pFT stands for partial Fourier reconstruction 2.
2.
|IevenIodd*| was used as
the weight for 2D polynomial fitting. When dealing with multichannel data, the
fitting was implemented jointly on all channels to obtain a single fitted ∆Φfit
3.
3.
The phase-corrected partial Fourier reconstruction was
based on
$$I(x,y)=\sum_{n=n_{0}-N_{p}/2}^{n_{0}+N_{p}/2-1}{s(x,n)e^{-i(ay^2+by-2\pi n\triangle k_{y}y)}e^{-i\triangle \theta _{n}(x,y)}}$$
$$\triangle\theta_{n}(x,y)=\begin{cases}\triangle \Phi_{fit}& \text{if $n$ is even} \\0 & \text{if $n$ is odd} \end{cases}$$
where x and y are the coordinates of a given voxel, n0 is the index of echo corresponding to the refocusing
of the voxel, Np is the
number of echoes involved in reconstructing the voxel, s(x,n) are SPEN signals obtained after step 1, a and b are the
quadratic and linear phase modulation coefficients imparted by the
frequency-swept excitation, and Δky
is the k-space step along SPEN dimension.
4. For multichannel imaging, the ghost corrected images of all
channels were finally combined using root of sum of squares.
The
effectiveness of the proposed ghost correction scheme was validated by
experiments at 3T on Siemens Prisma scanner and at 7T on Varian animal scanner.
Its robustness was further verified by distortion unwarping on the
ghost corrected data at 7T.
Results and Discussion
Human brain experiments were conducted on four
healthy volunteers with informed consent. Three orthogonal orientations were
scanned with fat suppression, 24 slices for each. FOV=220×220mm2 with slice thickness=5mm, single-shot SPEN MRI were scanned with TR/TE=5000ms/66 ms, acquisition
matrix=64×64, SW=1502Hz/voxel, bandwidth/duration/flip
angle of excitation=50kHz/5.12ms/30°, referential TSE images were scanned with
TR/TE=5000ms/104ms and acquisition matrix=256×256. Figure 2 shows that single-shot SPEN MRI can
provide images with high fidelity similar to
the multi-shot TSE images, even at
regions susceptible to distortions, such as those near orbital frontal/temporal/occipital
lobes and spinal cord. The Nyquist ghosts
are manifested as ghosts superimposed on the parent images and stripe-like
artifacts which were successfully
removed by the proposed phase-corrected
pFT reconstruction without
blurring the images, as is the case by SR method.
For in vivo rat experiments, the rats were
anesthetized with chloral hydrate solution (10%) through intraperitoneal
injection (0.3ml/100g) before scans were carried out. FOV=100×80mm2 with slice thickness=2mm, single-shot data were acquired by self-refocused SPEN sequence
with TR/TE=5000 ms/34 ms, acquisition matrix=64×64, SW=250kHz, bandwidth/duration/flip angle of
excitation=9.8kHz/26.1ms/90°, referential
multi-shot GRE image was scanned with TR/TE=20ms/3ms and acquisition matrix=128×128. The field map needed for unwarping was calculated
from the phase difference of two scans, one was symmetric and the other was
asymmetric with a time delay of 1ms inserted
before the echo train. Phase-corrected
pFT reconstruction was implemented to obtain the distorted source image with possible Nyquist ghost removed
before subsequent distortion correction 4.
Figure 3 shows that the Nyquist ghost correction procedure did not compromise the unwarping performance. For the torso slice, the position of the readout window was hard to be perfectly aligned with the echo train, giving rise to
some stripes at the bottom of the image before unwarping which led to undesired artifacts and incomplete signal recovery around the locations after unwarping (marked). With ghost correction, the stripe artifact on the
warped image was removed, improving the accuracy of the field map for subsequent distortion correction
and thus providing a better unwarping result.
Conclusion
Experimental results demonstrate that the proposed technique can provide more
reliable ghost correction than the previously reported measure without blurring
the image. It is applicable for both single-channel and multi-channel
acquisition. It would not compromise the performance of subsequent distortion
correction at high-field, but help to obtain a better unwarping result when
Nyquist ghost is present.
Acknowledgements
No acknowledgement found.References
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2.Chen Y, et al.MAGN RESON MED.2013;69:1326-1336.
3.Xu D, et al.MAGN RESON MED.2010;64:1800-1813.
4.Chen Y, et al.J MAGN RESON. 2015;254:1-9.