Synopsis
A common assumption for phase combination and dynamic distortion correction is that phase offsets (Ф0), i.e. the phase of coil sensitivities, are temporally stable. We investigate the validity of this assumption at 7T for long measurements (40min) and large head rotations (up to 12°) made with multi-channel coils. We show that changes in separate-channel Ф0,ch have little effect on the combined phase images (unwarping errors of 0.2 voxel, reduction in phase matching quality by 2%). We thus conclude that the assumption of Ф0 temporal stability holds and methods based on this assumption should work at 7T with substantial motion.Purpose
To assess the common assumption that phase offsets
(Ф0), i.e. the phase of complex coil sensitivities, are temporally stable and to investigate the validity of this assumption at 7T for long measurements made with multi-channel coils and large head rotations.
Introduction
Phase for each channel Фch consist of echo-time-independent phase offset Ф0,ch, and a term describing local variations from the static magnetic field, ΔB0:
ϕch(TE)=ϕ0,ch+2πγTE△B0
In order to create accurate B0 field-maps (for correction of EPI distortions) or optimally combine phase data from multi-channel coils (for SWI or QSM) one needs to remove Ф0,ch from the phase from each channel. Several dynamic distortion correction methods share a common assumption that Ф0 is temporally stable1–4. They have only been tested for moderate motion, using volume coils and up to 3T, where Ф0 varies slowly in space. At 7T with multi-channel coils and shorter RF wavelengths Ф0 differs for each coil element and is more inhomogeneous, which increases its vulnerability during long acquisitions or motion (changing the coil loading). Changes in Ф0 also influence the quality of phase combination, reducing SNR, in methods using a reference scan for Ф0 estimation5–7. To address these concerns we examine the variations in Ф0,ch due to technical causes and motion and their influence on the accuracy of field-mapping and phase combination.
Methods
Measurements were carried out with a 7T Siemens scanner and a 32-channel head coil. Changes in Ф0,ch caused by scanner instabilities were measured in a phantom during four dual-echo EPI scans of 10 min each (TEs=[9.4,27.9]ms, TR=2s, 3.2x3.2x3.2mm3, bandwidth=1532Hz/pix). Changes in Ф0,ch due to motion were investigated for three volunteers who rotated their head slowly but continuously about the left-right axis during the acquisition of dual-echo EPI. For one volunteer, additional dual-echo GE scans (with higher SNR and resolution than EPI) were acquired at 8 head poses with no motion during acquisition (TEs=[2.5,5.0]ms, TR=400ms, 1.6x1.6x2mm3, bandwidth=540Hz/pix).
Analysis
Field-maps were calculated for all acquisitions using the Hermitian
inner product8. These were multiplied by the first TE and subtracted
from separate-channel phase data yielding Ф0,ch for all channels. GE scans were additionally used for evaluation of phase combination quality when Ф0,ch
were acquired at a different pose than a target image (i.e. when motion
occurred between the reference and the target scan). For this purpose
combined complex data Ct,rcomb were calculated according to6:
Ct,rcomb=∑chMtchei(ϕtch−ϕr0,ch)
where t and r denote the target and reference pose respectively, ch is a channel index. When r≠t
the Фr0,ch were extrapolated outside the brain to account for
motion. The combined phase was obtained from
angle(Ct,rcomb). Errors in the phase were mapped by taking
the absolute value of the difference between phase reconstructed using
Фr0,ch with r=t (optimal solution with no motion) and r≠t (non-optimal solution with motion). The quality Q of phase combination was quantified using6:
Q=abs(Ct,rcomb)∑chMtch.
Results
During a 40min long phantom experiment the Ф0,ch increased slowly but remained small: the weighted mean change in Ф0,ch (with separate magnitudes as weights) from the beginning to the end of the experiment was 0.061±0.017rad.
Figure 1 presents Ф0,ch changes in 4 representative channels from GE scans with head rotation up to 12.0°. The weighted mean change in Ф0,ch was up to 0.22±0.13rad for 12.0° rotation (Fig.1e, channel 16). Changes in Ф0,ch were low at all poses in the regions characterized by high
signal (Fig.1d). Similar results, with the same range of motion (12.0°),
were obtained for EPI measurements.
Figure 2 shows phase images combined using Фr0 with r=t=6 or r=t=8 (Fig.2b) and r=1, t=6 or t=8
(Fig.2c). The difference between those two scenarios is presented in
Fig.2d, where phase errors up to 0.3rad occurred in a dorsal slice for 6.3° rotation
between reference and target scan (Fig.2d, Pose 6) and
0.6rad for 12° rotation (Fig.2d, Pose 8). Those errors can
be translated into distortion correction errors of about 0.1 (for 6.3°)
and 0.2 (for 12°) voxel for a sequence parameters typical for
whole-brain fMRI at 7T (9,10) (Fig.2c, scale in voxels). The quality of
phase matching was reduced by up to 2% for the largest head rotation
(Fig.2e).
Discussion and conclusion
Long EPI measurement (40min) and large motions cause changes in separate-channel
Ф0,ch
(0.22±0.13rad for 12.0° rotation), which have little effect on the
combined phase images. Negligible unwarping errors of about 0.2 voxel
and reduction in phase matching quality by only 2% allow us to conclude
that the assumption of
Ф0,ch temporal stability holds and phase
combination and dynamic distortion correction methods based on this
assumption should work at 7T with separate channel-coils and substantial
motion.
Acknowledgements
This study was funded by a DOC fellowship of the Austrian Academy of Science. Additional support was provided by the Austrian Science Fund (FWF KLI 264).References
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