Accelerated 3D coronary MRA using non-rigid motion corrected regularized reconstruction
T. Correia1, G. Cruz1, R. M. Botnar1, and C. Prieto1

1Division of Imaging Sciences and Biomedical Engineering, King's College London, London, United Kingdom

Synopsis

Accelerated 100% scan efficiency whole-heart 3D coronary MR angiography (CMRA) is achieved by combining undersampling and non-rigid motion correction in a unified regularized reconstruction. 3D undersampled CMRA is performed using a golden-step spiral-like Cartesian trajectory. Motion correction is achieved in two steps: beat-to-beat 2D translational correction with motion estimated from interleaved image navigators, and bin-to-bin 3D non-rigid correction with motion estimated from the data itself. A generalized matrix formalism with total variation regularization is used to perform the non-rigid correction directly in the reconstruction. This approach produces good quality images, comparable to those of a navigator-gated approach, but in a ~5x shorter scan time.

Introduction

A major challenge in whole-heart coronary MR angiography (CMRA) is image quality degradation due to respiratory motion. Free-breathing “pencil-beam” navigator-gated acquisitions are commonly used to minimize respiratory motion. However, this approach only compensates for translational motion in the superior-inferior (SI) direction and leads to prolonged acquisition times, since only a portion of the acquired data is used for reconstruction (referred to as scan efficiency). Several approaches have been introduced recently to achieve 100% scan efficiency and correct for more complex motion in fully sampled acquisitions.1-4 These approaches usually correct for beat-to-beat translational motion based on image navigators (iNAV) or correct for bin-to-bin affine motion estimating the motion from the data itself. Here we propose a combined 2D beat-to-beat translational and 3D bin-to-bin non-rigid motion correction approach, combined with undersampling acquisition to further reduce the scan time. A generalized matrix formalism with total variation regularization (GM-TV) is used to perform the non-rigid correction directly in the reconstruction.5,6 The proposed GM-TV method was tested on 3 healthy subjects and compared against a conventional 6mm navigator-gated and tracked acquisition.

Methods

Undersampled 3D CMRA is acquired using a golden-step spiral-like Cartesian (CASPR) trajectory,4 which samples the ky-kz plane with spiral interleaves on a Cartesian grid. Consecutive spirals are separated by the golden-angle θG=111.25°. A 2D golden radial (GR) iNAV is acquired at every heartbeat interleaved with each segment of the whole-heart 3D CMRA scan (Fig1.a). 2D iNAVs are reconstructed using non-uniform FFT and registered to a common respiratory position to estimate 2D translational (SI and right-left: RL) beat-to-beat motion (Fig1.b). The SI dimension of this motion is used to group the 3D CMRA data into different respiratory bins (Fig1.c) and 2D translational motion for each bin is performed. Each highly undersampled bin is reconstructed with soft-gated total variation regularized SENSE (SENSE-TV)6 and 3D non-rigid motion is estimated via image registration (Fig1.d). The estimated bin-to-bin non-rigid motion fields are incorporated into an undersampled motion compensated reconstruction using the GM-TV method (Fig1.e), given by:

$$\hat{I}=\textrm{arg}\,\textrm{min}_I\left\{\frac{1}{2} \left\| EI-K \right\|^2 + \lambda \, TV\right\}\,\textrm{with}\,\,E=\sum_b A_bFSU_b,$$

where $$$\hat{I}$$$ is the reconstructed non-rigid motion corrected image, $$$K$$$ is the translational corrected k-space data, $$$\lambda$$$ is the regularization parameter, $$$TV$$$ represents the 3D spatial total variation function, $$$A_b$$$ is the sampling matrix corresponding to bin $$$b$$$, $$$F$$$ is the Fourier transform, $$$S$$$ are the coil sensitivities and $$$U_b$$$ are the non-rigid motion fields. This problem is solved using a nonlinear conjugate gradient method. A similar cost function, without bin-to-bin motion information, is used to reconstruct images $$$\hat{I}_b$$$ for each bin from binned data $$$K_b$$$:$$$\hat{I}_b=\textrm{arg}\,\textrm{min}_{I_b}\left\{\frac{1}{2}\left\| EI_b - K_b \right\|^2+\lambda\,TV\right\}\, \textrm{with} \,\,E=A_bFS$$$.

In-vivo free-breathing experiments were performed on three healthy subjects on a 1.5T Philips scanner using a 32-channel receiver coil. Acquisitions were performed using undersampled 2D GR iNAV (gradient echo, 4x4mm in-plane resolution, 25mm slice thickness, 300x300 FOV, TR/TE = 3.6/1.5ms, flip angle = 5°, 24 radial profiles) interleaved with segmented 3D b-SSFP CASPR acquisition. Relevant scan parameters for 3D CASPR are: FOV = 300x300x100mm, resolution = 1x1x2mm, TR/TE = 5.3/2.6ms, flip angle = 70°, T2 preparation (T = 50ms), fat saturation (SPIR), subject specific mid-diastolic trigger delay, acquisition window ~120ms, 1 spiral-like interleaf per R-R interval, 3x and 4x undersampling with corresponding acquisition times of 3.5min ± 0.4 and 2.4min ± 0.2. Three bins with undersampling factors of 9x and 12x (for the 3x and 4x datasets, respectively) were reconstructed to estimate non-rigid respiratory motion with end-expiration as reference position. A fully sampled 6mm navigator-gated and tracked acquisition was performed with the same trajectory and identical parameters for comparison. The nominal acquisition time of the navigator-gated acquisition was of 10.6min ± 1.4.

Results

Reformatted images obtained with the fully sampled navigator-gated and proposed GM-TV approaches are shown in Fig.2 for two healthy subjects, along with motion corrupted SENSE-TV 3x and 4x undersampled reconstructions. Significant motion blurring is observed in the non-corrected SENSE-TV images. The proposed methodology provides reconstructions from 3x and 4x undersampled data of comparable quality to those achieved with the navigator-gated scan. The navigator efficiency for the gated scan was 66%±4 compared to ~100% for the proposed approach (respiratory outliers were not included in reconstructions).

Conclusions

A motion compensated reconstruction framework for accelerated 3D CMRA has been proposed. High-temporal resolution (beat-to-beat) translational motion is estimated from 2D iNAV images and 3D non-rigid motion is estimated from undersampled high-resolution 3D CMRA data. Non-rigid motion is incorporated into a generalized matrix formalism with total variation regularization reconstruction to obtain images of comparable quality to gated scans, enabling acquisitions to be performed about 5 times faster.

Acknowledgements

This work was supported by the Medical Research Council (MRC), grant MR/L009676/1.

References

1. Henningsson et al. Whole-heart coronary MR angiography with 2D self-navigated image reconstruction. MRM 2012; 67:437-445.

2. Bhat et al. 3D radial sampling and 3D affine transform-based respiratory motion correction technique for free-breathing whole-heart coronary MRA with 100% imaging efficiency. MRM 2011; 65:1269-1277.

3. Aitken et al. 100% Efficient three-dimensional coronary MR angiography with two-dimensional beat-to-beat translational and bin-to-bin affine motion correction. MRM 2014; 74:756-764.

4. Prieto et al. Highly efficient respiratory motion compensated free-breathing coronary MRA using golden-step Cartesian acquisition. JMRI 2015; 41:738-746.

5. Batchelor et al. Matrix description of general motion correction applied to multishot images. MRM 2005; 54:1273-1280.

6. Cruz et al. Accelerated motion corrected three-dimensional abdominal MRI using total variation regularized SENSE reconstruction. MRM 2015; DOI: 10.1002/mrm.25708.

Figures

Fig1.a) 2D iNAV prior to each segment of an undersampled 3D CMRA scan. b) Beat-to-beat translational motion estimated from iNAVs. c) 3D data assigned into respiratory bins and corrected for 2D translational motion. d) Bin images reconstructed and registered to estimate non-rigid motion. e) Non-rigid motion incorporated into GM-TV reconstruction.

Fig.2. Images obtained for two subjects using: a) fully sampled navigator-gated approach, b) GM-TV method with non-rigid motion correction 3x undersampled and c) 4x undersampled, d) motion corrupted SENSE-TV 3x undersampled and e) 4x undersampled. Total acquisition times are indicated in each subfigure.



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
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