Synopsis
In order to image in the large B0 field inhomogeneity near
metallic implants, multi-spectral imaging sequences, such as MAVRIC-SL, acquire
images at multiple spectral bins to reduce distortion while imaging the entire
anatomy. However, blurring is introduced when these overlapping bins are
combined. While a deblurring method, which uses a field-map estimated from the bin images, does exist, the resulting images are subject to increased
noise and distortion. Here we propose both a better field-map estimation method
along with an improved deblurring algorithm, both of which are less sensitive
to noise and help provide excellent deblurring without distortion.Introduction
While multi-spectral imaging sequences, such as
MAVRIC-SL, have proven effective at imaging near metallic implants, they often
suffer from blurring in the frequency-encode direction due to varying shift in
neighboring spectral bins. A deblurring scheme has been proposed that uses a
field-map estimate to correct this effect, but it may add distortion as well as
noise from spectral bins that do not contain real signal [1]. While the field-map can be
estimated from the MAVRIC-SL data itself, current techniques become biased in
the presence of noise. Here we propose a new field-map estimation scheme, using
an SNR-optimal matched filter approach, and a new bin
combination method that removes blurring, artifacts,
and noise arising from spectral bins that
do not contain real signal.
Methods:
Current field-map estimation uses a center-of-mass technique
given as$$f_{CM}(x,y,z)=\frac{\sum_1^{N_b}s_b(x,y,z)f_b}{\sum_1^{N_b}s_b(x,y,z)},$$
where$$$\:N_b\:$$$is the number of spectral bins acquired,$$$\:f_b\:$$$is the
excitation center frequency of bin$$$\:b,\:$$$and$$$\:s_b\:$$$is
the magnitude bin signal at the given pixel. While this method works well in
the absence of noise, it is very sensitive to noise and becomes biased towards
the center bin when using magnitude images.
Matched filters are SNR-optimal linear detectors in the
presence of Gaussian noise and are not prone to bias. For MSI, this is accomplished
by comparing the magnitude signal across bins with the signal variations that would be expected at different frequencies. This matched filter field-map
estimate is then$$f_{MF}(x,y,z)=\text{argmax}_{f}\:s_{mf}(x,y,z,f),\:\text{and}\:s_{mf}=\sum_1^{N_b}s_b(x+\frac{f-f_b}{BW_p},y,z)RF(f-f_b),$$where$$$\: s_{mf}(x,y,z,f)\:$$$represents the
matched filter signal,$$$\:RF\:$$$is the rf-profile used to excite the bins,$$$\:BW_p\:$$$is
the readout bandwidth per pixel, and$$$\:\frac{f-f_b}{BW_p}\:$$$accounts
for the varying spatial shift between bins. Figure 1 shows the center-of-mass
and matched filter field-map estimates of an example spectral bin profile with
and without noise.
Instead of combining bins by taking
the root-sum-of-squares (RSOS) across all bins, as is commonly done, noise can
be suppressed by using the matched filter signal$$$\: s_{mf}(x,y,z,f_{MF}),\:$$$which only adds
signal from bins that are expected to have it. As field-map estimation error leads
to distortion and edge artifacts, a goodness-of-fit metric, a value ranging
from 0 to 1 indicating the similarity between the actual and expected bin
signal profile, is used to account
for situations when the field-map estimate is not reliable. Using the goodness-of-fit, the final image is a
weighted average of the RSOS image, which has blurring but no distortion, with
the deblurred image, which may have distortion when the field-map is
inaccurate. Our proposed reconstruction pipeline is shown in Figure 2.
For validation of the proposed
techniques, a digital hip implant
phantom was created with realistic off-resonance maps. A 3D MAVRIC-SL scan was
then simulated, followed by adding complex Gaussian noise with SNR=40 before
taking the image magnitude.
This method was also validated in
an agar phantom with a hip implant and resolution grid. The phantom scan parameters
were: TE/TR=7.4/4000ms, matrix-size=512x384x40, FOV=30x30x8cm$$$^3,\:$$$and acquisition-time=35
minutes. A volunteer with a knee implant was also scanned following IRB
guidelines using: TE/TR=7.5/2900ms, matrix-size=320x256x40, FOV=18x18x16cm$$$^3,\:$$$parallel-imaging=2x2,
and acquisition-time=6.7 minutes. All scans/simulations used or assumed a GE
3.0T MR750 scanner (GE Healthcare, Waukesha, WI) with spectral bin spacing of
1kHz and 22 bins ranging from -11kHz to 10kHz.
Results
Figure 3 shows the results of the simulated phantom,
including the field-map error using both estimation methods, and bin combined
images. Here we see that matched filter
field-map estimation is both less noisy and less biased than the current
method.
The agar
phantom and in vivo knee results are shown in Figures 4 and 5 respectively.
These show, as do Figure 3, that the proposed method performs well at
deblurring and leads to significantly less distortion near the metallic implant.
Discussion
While the matched filter field-map estimate is generally
not biased, it may be biased when the full bin profile is not visible due to
the limited number of bins acquired. Additionally, there are regions where the off-resonance
is rapidly varying, which results in a small field-map estimation bias for the
matched filter method. This is likely because the signal is either compressed
or stretched [2], depending on the slope of the off-resonance, within a bin,
creating ambiguity in the field-map estimation. Additionally, while the
proposed deblurring method performs well, in regions where the goodness-of-fit
is low the algorithm errs on the side of less distortion at the expense of not
fully correcting the blur.
Conclusion
We have shown a method for improved field-map
estimation and deblurring in MAVRIC-SL. This method creates images with less
noise and significantly reduced distortion near the metallic implant when
compared to current deblurring techniques.
Acknowledgements
NIH R01-EB017739 and R21-EB019723
GE Healthcare
NSF GRFP: DGE-114747
References
1) Koch KM, Brau AC, Chen W, Gold GE, Hargreaves BA, Koff M,
McKinnon GC, Potter HG, King KF. Imaging near metal with a MAVRIC-SEMAC hybrid.
Magn Reson Med 2011;651:71–82.
2) Koch KM, King KF, Carl M, Hargreaves BA. Imaging Near
Metal: The Impact of Extreme Local Field Gradients on Frequency Encoding
Processes. Magn Reson Med 2014;71:2024-2034