Adrian Emmanuel Georg Huber1, Christian Binter1, Claudio Santelli1, and Sebastian Kozerke1
1Institute for Biomedical Engineering, University and ETH Zurich, Zurich, Switzerland
Synopsis
Entangled denoising (eSPARSE) was developed for highly
undersampled 4D Flow MRI, combining both k-t SPARSE-SENSE and 3D-L1-Wavelets. Undersampling
factors of 8 and 10 were studied in healthy volunteers. The proposed algorithm
improves the reconstruction of fluid vector fields in the aorta compared to k-t
SPARSE-SENSE. The relative RMSE velocity is reduced by up to 16% for an
undersampling rate of R = 8 and by up to 19% for R = 10. Entangled denoising (eSPARSE)
is a promising approach to accelerate 4D Flow MRI while preserving key features
of the flow field.Introduction
A number of approaches based on compressed sensing (1)
have been presented to accelerate time-resolved phase-contrast velocity mapping
(2,3). In 4D Flow MRI (3), scan time reduction is of critical importance to
improve its clinical applicability and translation. To this end, various
implementations of compressed sensing with and without joint parallel imaging have
been described (4-8). A key challenge of present methods relates to finding an
appropriate sparsifying transform that is suitable for data of limited spatial
and temporal resolution. While spatial sparsification using Wavelets or other
transforms (1) can compromise resolution in space, reconstruction based on
temporal transforms may introduce temporal blurring.
It is the objective
of the present work to entangle spatial and temporal nonlinear denoising to
better preserve spatiotemporal fidelity of 4D Flow MRI at high acceleration
factors. The concept is demonstrated using in vivo data acquired in the aorta
of healthy subjects.
Methods
In-vivo 4D Flow MRI data were acquired on a 3T Ingenia
system (Philips Healthcare, Best, The Netherlands) equipped with a 28-channel
cardiac coil array using the following scan parameters: spatial resolution:
2x2x2mm
3, temporal resolution: 40ms, isotropic venc of 200cm/s,
retrospective cardiac triggering and respiratory navigator gating (1.5mm gating
window). Data were retrospectively undersampled by factors of 8 and 10 following
a random 3D Poisson distribution which was varied for every time frame. Coil
calibration data were obtained from a separate fully sampled pre-scan.
Entangled compressed sensing (eSPARSE) reconstruction
was implemented following ideas presented in (9). In brief, multiple
reconstructions are performed interleaved and results thereof are combined
patch-based using a weighted sum in each iteration step until final convergence
is achieved. In this work, k-t SPARSE-SENSE (4) using both the temporal Fourier
transform (
FTtime) and
Principal Component Analysis (
PCA) along
with 3D-L1-Wavelets operating separately on each time frame were implemented to
sparsify the data prior to the nonlinear denoising step. The FISTA optimization
method (10) was implemented in Matlab (Mathworks, Natick, MA) and used to solve
both minimization problems. The result of each iteration of the eSPARSE framework
was subdivided into spatially localized patches of 10x10x5 voxels while keeping
all time frames. The centroid of the patches was determined and the individual
patches were weighted by the inverse of the Euclidean distance between
themselves and the centroid. The weighted patches were then recombined. To
reduce temporal aliasing during 3D-L1-Wavelet reconstruction, this step was
dynamically activated during the iteration process (Figure 1).
Reconstruction results of the eSPARSE approach for 8-
and 10-fold undersampling were compared to the fully sampled reference and
relative to standard k-t SPARSE-SENSE reconstruction (4) by calculating
root-mean-square errors (RMSE) of velocity along with an assessment of
directional velocity error.
Results
Compared to k–t SPARSE-SENSE, flow data derived with
eSPARSE reconstruction showed less noise and preserved flow patterns more
faithfully (Figure 2). In Figure 3 it is seen that in-plane velocity vectors
are more aligned with the reference data compared to data reconstructed with
k-t SPARSE-SENSE. Figure 4 shows that both directional error and RMSE of the velocity
field are lower for eSPARSE when compared to k-t SPARSE-SENSE: directional error
(eSPARSE/k-t SPARSE-SENSE) 3.1%/4.6% in systole and 23.6%/34.7% in diastole and
RMSE velocity 13.1%/15.5% and 38.9%/44.4% for 8-fold undersampling For R = 10
the directional error is 3.5%/5.5% in systole and 25.0%/38.2% in diastole and
the RMSE velocity is 14.1%/17.5% and 39.7%/46.6%. Regression analysis in Figure 5 shows that on
average eSPARSE approximates the hypothetical slope of 1 better when compared
to k-t SPARSE-SENSE (slope: 0.94 vs. 0.93 with R
2 0.96 vs. 0.93 for R
= 8 and 0.94 vs. 0.92 with R
2 0.95 vs. 0.91).
Discussion
In this work an entangled denosing approach to
reconstruct undersampled 4D Flow MRI data has been implemented and compared
against k-t SPARSE-SENSE. A reduction of error of both velocity magnitude (by
up to 16% for R = 8 and 19% for R = 10) and velocity direction (by up to 33%
for R = 8 and 36% for R = 10) was achieved. These undersampling rates are
currently targeted for practical 4D Flow MRI protocols. In eSPARSE, patches are
combined and the individual weights employed are therefore crucial. It is
essential that the L1-Wavelet algorithm acts only after a few iterations of k-t
SPARSE-SENSE to first reduce temporal aliasing and to ensure convergence.
Conclusion
Entangled denoising (eSPARSE) is a promising approach
to accelerate 4D Flow MRI while preserving key features of the flow field.
Acknowledgements
No acknowledgement found.References
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