Eun Ji Lim1,2 and Jaeseok Park2
1Center for Neuroscience Imaging Research, Institute for Basic Science (IBS), Suwon, Korea, Republic of, 2Department of Biomedical Engineering, Sungkyunkwan University, Suwon, Korea, Republic of
Synopsis
Dynamic contrast-enhanced (DCE) 3D MRA has been widely used for diagnostic assessment of vascular morphology and hemodynamics in a clinical routine. It acquires a series of time-resolved images, revealing details on contrast dynamics. To extract angiograms while eliminating unwanted background tissues, subtraction between the reference (pre-contrast) and DCE images in each time frame is typically employed. However, in the presence of non-stationary background signal transition such as subject motion and time-varying magnetic field, subtraction results in incomplete background suppression and noise amplification. Due to the inherent, subtraction sparsity in either between the reference and each dynamic image or between neighboring time frames, compressed sensing (CS) is well suited to DCE MRA to enhance spatial and temporal resolution. Nevertheless, these approaches remain suboptimal due to the inherent limitation of subtraction. In this work, we propose a new, DCE MRA method called “concentration time-course Model-based Angiogram SEparation (MASE)”, in which DCE signals in the temporal direction are directly modeled and reconstructed with sparsity priors while background signals are attenuated.Introduction
Dynamic contrast-enhanced (DCE) 3D MRA has
been widely used for diagnostic assessment of vascular morphology and
hemodynamics in a clinical routine.1 It acquires a series of
time-resolved images, revealing details on contrast dynamics. To extract
angiograms while eliminating unwanted background tissues, subtraction between
the reference (pre-contrast) and DCE images in each time frame is typically
employed. However, in the presence of non-stationary background signal
transition such as subject motion
and time-varying magnetic field, subtraction results in incomplete
background suppression and noise amplification. Due to the inherent,
subtraction sparsity in either between the reference and each dynamic image or
between neighboring time frames, compressed sensing (CS) is well suited to DCE
MRA to enhance spatial and temporal resolution.2 Nevertheless, these
approaches remain suboptimal due to the inherent limitation of subtraction. In
this work, we propose a new, DCE MRA method called “concentration time-course
Model-based Angiogram SEparation (MASE)”, in which DCE signals in the temporal
direction are directly modeled and reconstructed with sparsity priors while
background signals are attenuated.
Theory
Concentration
Time-Course Model-based DCE Signal Model: It is
assumed that concentration time-course can be described by a single compartment
recirculation (SCR) model consisting of exponential transient phases and
steady state phase,3 while stationary tissues remain nearly identical over the
entire dynamic phases. Additionally, since subject motion is sporadic and
incoherent, motion-induced signals with changing time tend to be much less
correlated than the concentration time-course in blood vessels. Although the
concentration time-course is non-linear, we hypothesize that it can be
delineated by linear superposition of the temporal basis that is found by
performing singular value decomposition of the SCR model-based, simulation
data: $$$D=UΣV^H$$$ where $$$D$$$ is the row-vectorized
(concentration time-course), stacked (row-wise) simulation data, $$$U$$$ is the basis
of the column vectors, $$$V$$$ is the basis of the row vectors and becomes the
temporal basis of the concentration time-course, $$$Σ$$$ is the singular value matrix. Figure 1 represents the variation of
eigenvalues in $$$Σ$$$ and its corresponding eigenvectors in the temporal basis $$$V$$$.
Since most of singular values are close to zero, the concentration time-course
can be synthesized using only a few principal eigenvectors in $$$V$$$. Given the
considerations above, the proposed DCE signal model can be written by: $$$X = X_0 + X_{\mathrm{DCE}} +
N ⋍ X_0 + UV_r + N$$$ where $$$X$$$ is the Casorati matrix that an image column vector in each time frame
is stacked column-wise over the entire dynamic phases, $$$X_0$$$ is the
reference matrix consisting of the mean column vector by averaging the
pre-contrast images, $$$X_{\mathrm{DCE}}$$$ is the dynamic
angiograms of interest, $$$V_r$$$ is the truncated
temporal basis, and $$$N$$$ is the additive noise matrix.
Model-based
Angiogram Separation (MASE): The proposed angiogram reconstruction from
undersampled k-t space is performed by solving the following constrained
optimization problem with sparsity prior: $$ U=\underset{U}{\mathrm{argmin}} ||U||_1 \qquad s.t\quad d_r=F_{\mathrm{u}}(UV_r)$$ where $$$d_r$$$ is
the measured, residual (k-t space) between the reference and DCE data, and $$$F_{\mathrm{u}}$$$ is
the Fourier undersampling operator. Then, DCE angiograms are reconstructed by a
product of $$$U$$$ and $$$V_r$$$.
Methods and Results
DCE MRA data was acquired at 3T wole-body MR scanner (MAGNETOM
Verio, Siemens Medical solutions). Informed written consent was obtained from
volunteers with the approval of our institutional review board. A 3D spoiled
gradient echo sequence was used for the MRA acquisitions. The imaging
parameters were: TR/TE=2.5ms/0.94ms, in-plane matrix=320x240, number of
partition=144, Thickness= 1.2mm, Field Of View(FOV)=400x300mm in coronal
orientation, pixel bandwidth=868Hz, and flip angle=25°.
Figure 2 shows MIP images and their corresponding error maps
obtained using the proposed MASE with R = 1, 20, 30, 40, and 50.
Normalized-root-mean-square-error (NRMSE) at R = 50 is about 40% higher than
that with R = 20. Figure 3 compares the proposed MASE with conventional dynamic
CS and k-t RPCA at R = 40.2,4 Among the
competing methods, the proposed MASE clearly delineates time-varying DCE
angiograms (Figs. 3a-c) with the lowest level of background artifacts and
noise.
Conclusion
We
successfully demonstrated the feasibility of the proposed MASE in DCE MRA with
increasing reduction factors. In this work, DCE angiogram signals are directly
modeled and reconstructed, while the other signals that do not lie in the
subspace of DCE angiogram tend to be neglected. It is expected that the
proposed MASE would enable a rapid, robust DCE MRA and widen its applications in a clinical routine.
Acknowledgements
This
work was supported by IBS-R015-D1.References
[1] Korosec FR, et al. Time-resolved contrast-enhanced 3D MR angiography. Magn Reson Med. 1996;36(3):345-51.
[2] Rapacchi S, et al. High spatial and temporal resolution dynamic contrast-enhanced magnetic resonance angiography using compressed sensing with magnitude image subtraction. Magn Reson Med. 2014;71(5):1771-83.
[3] Johnson G, et al. Measuring blood volume and vascular transfer constant from dynamic, T(2)*-weighted contrast-enhanced MRI. Magn Reson Med. 2004;51(5):961-8.
[4] Trémoulhéac B, et al. Dynamic MR image reconstruction-separation from undersampled (k,t)-space via low-rank plus sparse prior. IEEE Trans Med Imaging. 2014;33(8)1689-701.