Reconstruction of asymmetrically undersampled high-resolution 23Na-MRI data after homodyne processing
Nicolas G.R. Behl1, Peter Bachert1, Mark E. Ladd1, and Armin M. Nagel1,2

1Medical Physics in Radiology, German Cancer Research Center (DKFZ), Heidelberg, Germany, 2Diagnostic and Interventional Radiology, University Medical Center Ulm, Ulm, Germany

Synopsis

Due to the low concentration of 23Na in the human body, 23Na-MRI suffers from long acquisition times Taq, especially for high nominal spatial resolutions. In this work we investigated the performance of homodyne data processing prior to the iterative 3D-Dictionary-Learning Compressed Sensing reconstruction (3D-DLCS) for the reconstruction of asymmetrically undersampled radial 23Na-data, in order to take advantage of the point-symmetry in k-space.

Purpose

Due to the low concentration of 23Na in the human body, 23Na-MRI suffers from long acquisition times Taq, especially for high nominal spatial resolutions1. The measurement time can be reduced by data undersampling and a consequent iterative Compressed Sensing (CS) reconstruction2,3,4,5. Here we investigated the performance of homodyne data processing6 prior to iterative 3D-Dictionary-Learning Compressed Sensing reconstruction (3D-DLCS)7 for the reconstruction of asymmetrically undersampled radial 23Na data, to take advantage of the point-symmetry in k-space.

Methods

Simulated T2-weighted and measured in-vivo 3D-radial 23Na-MRI were reconstructed with a Nonuniform Fast Fourier Transform (NUFFT)8 and 3D-DLCS. In each case, three datasets were reconstructed: The first contains a homogeneous distribution of the projections with an undersampling factor (USF) of 10. In the second dataset 30% of the projections were omitted. The projections were distributed asymmetrically. 60% of the data are acquired with USF=10 and the remaining 40% with USF=40. The missing projections are filled with zeros. The third set contains the same data as the second, but reweighted according to a homodyne procedure adapted to suit 3D-radial data (see Fig. 1). The points in k-space for which the corresponding mirrored datapoints are not acquired are weighted with w=2. Since the data from the scanner are complex, the real part of the phase-corrected image has to be used. A low-resolution phase image obtained from interpolating the data up to the Nyquist limit for USF=40 is used for this purpose9. The phase information that is lost in this step can be recovered during the iterative reconstruction of the data. Due to the relatively high resolution of the data and the low SNR, blocks of size 6×6×6 and a dictionary size D=600 were used for the 3D-DLCS reconstruction algorithm.

Simulated and in-vivo data: The nominal resolution for the simulated/measured data was Δx3=1.3×1.3×1.3mm3, TE/TR=0.3/20ms, α=37°. Eight averages were simulated/measured; the total measurement time was Taq=32min for the full dataset and Taq=23min for the asymmetrically sampled dataset. The image quality is assessed with the peak-signal-to-noise ratio (PSNR) in the reconstructions from simulated data. For the in-vivo-measurement, a healthy volunteer (male, age 23) was measured on a 7T whole-body MR system (Magnetom 7T, Siemens Healthcare, Erlangen, Germany). A double-resonant (1H: 297.2 MHz; 23Na: 78.6 MHz) quadrature birdcage coil (Rapid Biomed, Rimpar, Germany) was used. The data were acquired with a 3D density adapted radial sampling pattern10.

Results

The 3D-DLCS reconstruction of asymmetrically undersampled data shows blurring in the head-feet direction if the missing data are filled with zeros (Figs. 2c and 3d). This blurring can be markedly reduced by homodyne processing of the data prior to the iterative reconstruction, resulting in a better quality of sagittal or coronal slices of the measured object, similar to the ones from the uniformly sampled dataset (Figs. 2d and 3e). This is also reflected by the PSNR values calculated for simulated data: PSNR for the reconstructions from homodyne processed data and for the zero filled data were 22.4 and 21.9 respectively. For the 3D-DLCS reconstruction of the uniformly sampled dataset PSNR=23.7, and for the NUFFT reconstruction PSNR=14.2. The phase information that is lost in the homodyne processing of the data can be recovered during the iterative 3D-DLCS reconstruction of the data (Fig. 4). The resulting phase images are in good accordance with the ones from the uniformly sampled dataset. The total reconstruction time for one 3D-DLCS reconstruction was approximately 5h on a standalone desktop PC (Intel Core i7-2600 CPU, 3.4 GHz, 16 GB memory).

Discussion & Conclusion

The blurring in head-feet direction induced by asymmetrically undersampling of 3D-radial 23Na-MRI data can be efficiently reduced by homodyne processing prior to a reconstruction with the 3D-DLCS algorithm. After homodyne processing, the results from the 3D-DLCS reconstruction of the asymmetrically undersampled data with a nominal resolution of Δx3=1.3×1.3×1.3mm3 and Nproj=8750 are almost equivalent to those from of the uniformly sampled dataset with Nproj=12500, which corresponds to a measurement time reduction of 30%. The 3D-DLCS reconstructions of both the uniform and asymmetrical data greatly outperform the NUFFT reconstructions. The preservation of the image phase could be of interest e.g. for B0- and B1-correction of the image, which is a necessary step towards quantitative imaging.

Acknowledgements

This work was funded by the Helmholtz Alliance ICEMED - Imaging and Curing Environmental Metabolic Diseases, through the Initiative and Networking Fund of the Helmholtz Association.

References

[1] Madelin & Regatte, J Magn Reson Imaging (2013) 38:511-29. [2] Lustig M et al., Magn Reson Med (2007) 6:1182-95. [3] Atkinson et al., Proc. Intl. Soc. Mag. Reson. Med. 16 (2008), p.335. [4] Madelin et al., J Magn Reson (2011) 214:360-365. [5] Gnahm et al., Magn Reson Med (2014) 5:1720-32. [6] Noll et al., IEEE Trans Med Imaging (1991) 10 :154-63. [7] Behl et al. Magn Reson Med. 2015 DOI: 10.1002/mrm.25759. [8] Fessler et al., Trans. Signal Process. (2003) 2 :560-74 [9] Boada et al., Magn Reson Med (1997) 3:470-7. [10] Nagel et al., Magn Reson Med. 2009 62:1565-73.

Figures

Asymmetrical sampling scheme (reduced to 2D). The solid red, yellow and blue projections are acquired. The yellow projections are used for the interpolation up to the Nyquist limit (green dashed). During homodyne processing, the data on the blue projections are weighted with w=2.

NUFFT and 3D-DLCS reconstructions of simulated 3D-radial data. The 3D-DLCS reconstruction of the asymmetrical data shows reduced blurring if homodyne processing is used instead of zerofilling. The 3D-DLCS reconstruction of homodyne processed asymmetrical data is comparable to the reconstruction of the fully sampled data.

NUFFT and 3D-DLCS reconstructions of in-vivo 3D-radial data. In the NUFFT reconstruction, the image is only discernable from noise if the data are Hamming filtered. The 3D-DLCS reconstructions of the uniformlysampled and the homodyne processed asymmetrical dataset show a strong noise reduction and only minimal blurring.

Phase images for the NUFFT and 3D-DLCS reconstructions. The phase information that is lost during homodyne processing of the asymmetrical data can efficiently be recovered through the iterative 3D-DLCS reconstruction and is in good accordance to the one of the fully sampled dataset.



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
3975