Nicolas G.R. Behl1, Peter Bachert1, Mark E. Ladd1, and Armin M. Nagel1,2
1Medical Physics in Radiology, German Cancer Research Center (DKFZ), Heidelberg, Germany, 2Diagnostic and Interventional Radiology, University Medical Center Ulm, Ulm, Germany
Synopsis
Due
to the low concentration of 23Na in the human body, 23Na-MRI
suffers from long acquisition times Taq, especially for high nominal
spatial resolutions. In this work
we investigated the performance of homodyne data processing prior
to the iterative 3D-Dictionary-Learning Compressed Sensing reconstruction
(3D-DLCS) for the reconstruction of asymmetrically undersampled
radial 23Na-data, in order to take advantage of the point-symmetry
in k-space.Purpose
Due
to the low concentration of
23Na in the human body,
23Na-MRI
suffers from long acquisition times T
aq, especially for high nominal
spatial resolutions
1. The measurement time can be reduced by data undersampling
and a consequent iterative Compressed Sensing (CS) reconstruction
2,3,4,5.
Here we investigated the performance of homodyne data processing
6
prior to iterative 3D-Dictionary-Learning Compressed Sensing reconstruction
(3D-DLCS)
7 for the reconstruction of asymmetrically undersampled
radial
23Na data, to take advantage of the point-symmetry in
k-space.
Methods
Simulated
T2-weighted and measured in-vivo
3D-radial 23Na-MRI were reconstructed with a Nonuniform Fast Fourier
Transform (NUFFT)8 and 3D-DLCS. In each case, three datasets were
reconstructed: The first contains a homogeneous distribution of the projections
with an undersampling factor (USF) of 10. In the second dataset 30% of the
projections were omitted. The projections were distributed asymmetrically. 60%
of the data are acquired with USF=10 and the remaining 40% with USF=40. The
missing projections are filled with zeros. The third set contains the same data
as the second, but reweighted according to a homodyne procedure adapted to suit
3D-radial data (see Fig. 1). The points in k-space for which the corresponding
mirrored datapoints are not acquired are weighted with w=2. Since the data from
the scanner are complex, the real part of the phase-corrected image has to be
used. A low-resolution phase image obtained from interpolating the data up to
the Nyquist limit for USF=40 is used for this purpose9. The phase
information that is lost in this step can be recovered during the iterative
reconstruction of the data. Due to the relatively high resolution of the data
and the low SNR, blocks of size 6×6×6 and a dictionary size
D=600 were used for the 3D-DLCS reconstruction algorithm.
Simulated
and in-vivo data:
The nominal resolution for the simulated/measured data was Δx3=1.3×1.3×1.3mm3, TE/TR=0.3/20ms, α=37°. Eight averages were simulated/measured;
the total measurement time was Taq=32min for the full dataset and Taq=23min
for the asymmetrically sampled dataset. The image quality is assessed with the
peak-signal-to-noise ratio (PSNR) in the reconstructions from simulated data.
For the in-vivo-measurement, a healthy volunteer (male, age 23) was measured on
a 7T whole-body MR system (Magnetom 7T, Siemens Healthcare, Erlangen, Germany).
A double-resonant (1H: 297.2 MHz; 23Na: 78.6
MHz) quadrature birdcage coil (Rapid Biomed, Rimpar, Germany) was used. The
data were acquired with a 3D density adapted radial sampling pattern10.
Results
The 3D-DLCS reconstruction of asymmetrically undersampled data shows
blurring in the head-feet direction if the missing data are filled with zeros
(Figs. 2c and 3d). This blurring can be markedly reduced by homodyne processing
of the data prior to the iterative reconstruction, resulting in a better
quality of sagittal or coronal slices of the measured object, similar to the
ones from the uniformly sampled dataset (Figs. 2d and 3e). This is also
reflected by the PSNR values calculated for simulated data: PSNR for the
reconstructions from homodyne processed data and for the zero filled data were 22.4
and 21.9 respectively. For the 3D-DLCS reconstruction of the uniformly sampled
dataset PSNR=23.7, and for the NUFFT reconstruction PSNR=14.2. The phase
information that is lost in the homodyne processing of the data can be
recovered during the iterative 3D-DLCS reconstruction of the data (Fig. 4). The
resulting phase images are in good accordance with the ones from the uniformly
sampled dataset. The total reconstruction time for one 3D-DLCS reconstruction
was approximately 5h on a
standalone desktop PC (Intel Core i7-2600 CPU, 3.4 GHz, 16 GB memory).
Discussion & Conclusion
The blurring in head-feet direction induced by asymmetrically
undersampling of 3D-radial
23Na-MRI data can be efficiently reduced
by homodyne processing prior to a reconstruction with the 3D-DLCS algorithm.
After homodyne processing, the results from the 3D-DLCS reconstruction
of the asymmetrically undersampled data with a nominal resolution of Δx
3=1.3×1.3×1.3mm
3 and N
proj=8750 are
almost equivalent to those from of the uniformly sampled dataset with N
proj=12500,
which corresponds to a measurement time reduction of 30%. The 3D-DLCS
reconstructions of both the uniform and asymmetrical data greatly outperform
the NUFFT reconstructions. The preservation of the image phase could be of
interest e.g. for B
0- and B
1-correction of the image,
which is a necessary step towards quantitative imaging.
Acknowledgements
This
work was funded by the Helmholtz Alliance ICEMED - Imaging and Curing
Environmental Metabolic Diseases, through the Initiative and Networking Fund of
the Helmholtz Association.References
[1] Madelin & Regatte, J Magn Reson Imaging (2013) 38:511-29.
[2] Lustig M et
al., Magn Reson Med (2007) 6:1182-95.
[3] Atkinson et al., Proc. Intl. Soc. Mag.
Reson. Med. 16 (2008), p.335.
[4] Madelin et al., J Magn Reson (2011) 214:360-365.
[5] Gnahm et al., Magn Reson Med (2014) 5:1720-32.
[6] Noll et al., IEEE Trans Med Imaging (1991) 10 :154-63.
[7] Behl et al. Magn Reson Med. 2015 DOI: 10.1002/mrm.25759.
[8] Fessler et
al., Trans. Signal Process. (2003) 2 :560-74
[9] Boada et al., Magn Reson Med (1997) 3:470-7.
[10] Nagel et al., Magn Reson Med. 2009 62:1565-73.