Rohini Vidya Shankar1, Houchun Harry Hu2, John C Chang3, and Vikram D Kodibagkar1
1Biomedical Engineering, Arizona State University, Tempe, AZ, United States, 2Radiology, Phoenix Children's Hospital, Phoenix, AZ, United States, 3Banner MD Anderson Cancer Center, Gilbert, AZ, United States
Synopsis
The spatial variations in brain metabolite concentrations can be mapped
using magnetic resonance spectroscopic imaging (MRSI). The long scan times in
MRSI do not permit its inclusion in pediatric imaging protocols. MRSI
accelerated by compressed sensing was used to image the pediatric brain for
various acceleration factors 2X-5X. The retrospectively undersampled
reconstructions showed high data fidelity for up to 80% undersampling when compared
with the fully sampled reference dataset. Studies are underway to prospectively
acquire and validate CS accelerated MRSI data in pediatric patients. Introduction
Magnetic resonance spectroscopic imaging (MRSI) is a useful technique
for assessing the in vivo spatial profiles of various key metabolites like
N-acetylaspartate (NAA), creatine, choline, and lactate. Changes in metabolite
concentrations can help distinguish between healthy and diseased tissues, thus,
providing diagnostic and prognostic information to the clinician, potentially
leading to improved treatment strategies. However, MRSI scans are not
accommodated in the current clinical acquisition window due to the lengthy scan
time involved – a 16x16 spatial grid would require 256 phase encoding gradients
to be played out. This results in a scan time of ~9-12 min depending on the TR,
with a further increase in time for larger volumes. Such long scan times are
particularly not desirable when imaging pediatric cases, particularly those
under anesthesia. Acceleration techniques like compressed sensing (CS)
1-2
allow a faithful reconstruction of the data even when the kspace is
undersampled well below the established Nyquist limit, and CS has been adopted
in MRSI reconstructions to reduce the scan time
3. The objective of
this study was to evaluate the fidelity of the CS reconstructions when applied
to the MR spectroscopic imaging of pediatric patients.
Materials and Methods
All MRSI data was acquired on a Philips 3T Ingenia MRI scanner. Fully
sampled MRSI data was collected on patients in the age range of 1 - 10 years,
with the following acquisition parameters – 16x16x2048 grid, TE/TR = 46/1500
ms, 1 average, 10 mm slice thickness, total scan time for the fully sampled
reference 1X dataset = 9 min. The kspace was pseudo-randomly undersampled to
generate datasets that represented 50% (2X), 33% (3X), 25% (4X), and 20% (5X)
acceleration. Retrospectively undersampled MRSI datasets were reconstructed in
Matlab by employing the conjugate gradient algorithm to solve the convex
optimization problem: argmin∥F
um−y∥
2+λ
L1∥Wm∥
1+λ
TVTV(m). The undersampled
reconstructions were quantitatively compared with the 1X dataset in terms of
the SNR and peak amplitudes of various brain metabolites. The error in
reconstruction was quantified using the normalized root mean square error (nRMSE)
metric. Minimal post processing was applied to the reconstructed datasets in
jMRUI
4 namely, apodization, phase correction, and removal of
residual water, and the corresponding metabolite maps were generated.
Results and Discussion
Figure 1 shows the metabolite maps for NAA, creatine, and choline for
various acceleration factors 1X-5X in a 9 year old female patient with no
abnormalities detected. Figure 2 depicts the metabolite maps following
quantification in a 10 year male with a brain tumor. In both cases, the CS
reconstructions for various acceleration factors demonstrate good fidelity with
the fully-sampled reference dataset, with negligible reconstruction errors. The
error in reconstruction, as quantified by the normalized RMSE, is illustrated for
both cases in Figure 3 and is below 2% for reconstructions up to 5X. All twelve
patient datasets retrospectively tested using the CS-MRSI reconstruction
algorithm showed very low reconstruction errors till 5X, indicating the
robustness of the reconstruction.
Conclusion
The feasibility of
CS-MRSI in pediatric patients has been demonstrated, with the accelerated
reconstructions showing negligible errors. Further studies currently underway
focus on prospective CS acquisitions on the scanner and on improvements in the
reconstruction algorithm.
Acknowledgements
No acknowledgement found.References
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Theory, IEEE Transactions on, 2006; 52(4): 1289-1306. [2] Lustig et
al, MRM, 2007; 58 (6): 1182-1195. [3] Geethanath et al, Radiology,
2012; 262 (3): 985-994. [4] Naressi et al, Computers in Biology and Medicine,
2001; 31(4): 269-286.