Arthur Coste1, Alexandre Vignaud1, Philippe Ciuciu1,2, Fawzi Boumezbeur1, Franck Mauconduit3, Alexis Amadon1, Sandro Romanzetti4, Denis Le Bihan1, and Cécile Lerman1
1MR Imaging and Spectroscopy Unit, NeuroSpin, Gif sur Yvette, France, 2Parietal, INRIA Saclay, Saclay, France, 3Siemens Healthcare, Saint Denis, France, 4University Clinic RWTH Aachen, Aachen, Germany
Synopsis
This work describes a novel method accounting for MR acquisition
properties (B0, B1+,B1-,T1,T2*)
to perform concentration measurements in the framework of in vitro Phosphorus MRI. Our pipeline uses a non-Cartesian 3D sequence
for efficient signal sampling and a wavelet regularized least square method for
reconstruction. We demonstrated within
an acceptable time for human experiment, for 5mm isotropic resolution, that we
are able to calibrate and measure absolute 31P concentrations.Introduction
Phosphorus MR Spectroscopy provides quantitative information about energy
metabolism
[1, 2]. At ultra-high magnetic fields (UHF),
31P-MR imaging
of specific metabolites like phosphocreatine (PCr) is a possible alternative to
lengthy MRSI approaches. In this study, we adapted an existing pipeline used
for
1H MRI
[3] to X-nuclei. At UHF we need to account for B
0
inhomogeneity, coil excitation field (B
1+) and sensitivity
(B
1-) and finally the intrinsic properties of studied
nucleus (longitudinal T
1 and transversal T
2* relaxation
rates).
Purpose
This work describes a novel method accounting for previously mentioned
properties and leading to accurate absolute Phosphorus concentration
calibration, manageable within acceptable time for Human investigations.
Material and Methods
Our complete quantification pipeline is depicted in Figure 1.
Measurements
were performed on a 7T Magnetom MR scanner (Siemens Healthcare, Erlangen,
Germany) with a double-tuned (1H/31P) mono-channel transmission coil, 8-channels phased array head
coil (Resonance Research Inc. Billerica, USA)[4].
Prior to all acquisitions B0
shimming was performed using the proton channel.
The field for the 31P coil
was computed using the XFL sequence[5]. Multiple runs of Twisted Projection Imaging[6] (TPI) sequences were
acquired with 5 different TE ranging from 4.5 to 40ms. Estimation of a B0
map is done with phase difference of the two first images with TE=4.5 and 10ms[7]. T2* was computed by fitting a mono-exponential decay based on
all magnitude images.
Unless otherwise stated, TPI parameters were TR/TE = 100/0.5ms, FA=10°,
isotropic FOV of 320mm and a 5mm isotropic resolution, linear portion p=0.75
and 7780 projections. TPI Images have been reconstructed by minimizing a
wavelet-based least square criterion using FISTA algorithm[8,9].T1 was determined using the Variable Flip Angle Method[10]
with 2 TPI acquisitions of FA of 5° and 20°.
Combining VFA acquisitions and previously determined parameters, we computed T1
and M0 by linear regression and obtained the spin density.
The coil sensitivity profile has been derived from previously
acquired TPI image with the lower FA (5°) by applying the low pass filter
method[11] to model its slow spatial variation.
Our goal is to measure the concentration of a sphere filled with Phosphate
Buffered Saline (PBS) solution at 40mmol/L. Tubes containing either pure water
or diluted Phosphorus at known concentration surrounded the sphere. Their
spatial arrangement is illustrated in Figure
2.
Results
Intermediate and final results for our 31P Phosphorus
quantification protocol are reported in Figure
3.
Panels (a) and (b) show a transversal slice of the 3D TPI
images with flip angles of 5° and 20°, respectively.
Panel (c) shows the map acquired with the XFL sequence and then
interpolated. We can clearly notice that the targeted FA is not homogeneously reached everywhere which creates some inaccuracies. Panel (d)
presents the B1- map computed from low order polynomial
interpolation inside the spherical compartment of image (a) and assuming constant sensitivity elsewhere. Panel (e)
illustrates the T1 map with estimated mean value of 5.5s. T2* was estimated at about 10ms in
average.
Panel (f) represents the magnetization map and
panel (g) depicts the corrected spin
density of our phantom.
Absolute
concentration was obtained by means of a calibration step performed by
measuring the spin density in each compartment (panel (g) presents the used ROI). Such setup allows estimating a 36.6mmol/L
concentration in the sphere to be compared with a theoretical concentration of 40mmol/L. Figure (h) illustrates the estimated concentration distribution in our
phantom based on calibration equation of Figure 4.
Discussion and Conclusion
In this study we demonstrate the ability to perform accurate
concentrations measurements of in vitro
31P by taking all properties of UHF acquisition in account.
Concentrations used in this study are in agreement with in vivo concentration of nuclei such as
Sodium for instance. We achieved a satisfying isotropic resolution of 5mm with
a total acquisition protocol lasting about 1.5 hour. More information about the
reconstruction pipeline for TPI images is given in other submitted work[9].
Moreover, using Multiple Echo Sequence might allow acquiring all echoes at the
same time providing a 2-fold acceleration.
In this study, perfect spoiling was assumed leading to a slightly
overestimated T1 value[12]. Comparison with reference methods for both T1[13] and
T2*[14] estimation will be performed. The computed B0 map has not
yet been taken into account as the result is not satisfying enough due to high
TE values. Nevertheless, the initial B0 shimming step ensures relatively good homogeneity. In the future, we plan to apply this pipeline for in
vivo quantification of Phosphorylated metabolites and Sodium in the human
brain.
Acknowledgements
No acknowledgement found.References
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