Kristian Rink1, Moritz C. Berger1, Nadia Benkhedah1, Christine Gnahm1, Peter Bachert1, and Armin M. Nagel1,2
1German Cancer Research Center (DKFZ), Heidelberg, Germany, 2University Medical Center Ulm, Ulm, Germany
Synopsis
Phosphorus (31P)-containing biomolecules play a crucial role in the energy metabolism of all cells. Since the in vivo MR signal of
31P is four orders of magnitude smaller
compared to hydrogen, strategies to improve the signal-to-noise (SNR) are required. Therefore, this study focuses on the development of a
signal-effective 31P acquisition in combination with a constraint iterative
reconstruction applying prior knowledge from recorded hydrogen (1H) data.Purpose
Phosphorus (
31P)-containing biomolecules play a crucial role in the energy metabolism of all cells. In
comparison to hydrogen (
1H), the
in
vivo MR signal of
31P is four orders of magnitude lower.
Therefore, this study focuses on the development of a signal-effective
31P
acquisition [1] combined with a constraint iterative reconstruction
employing prior knowledge from recorded
1H data [2].
Methods
Two healthy volunteers were examined on a 7 T whole body MR system (Magnetom
7 T, Siemens Healthcare, Germany) using a double-resonant (31P/1H)
quadrature birdcage coil (Rapid Biomed GmbH, Germany). Due to the distinct
chemical shift of 31P-containing molecules, frequency selective excitation was performed
by a Gaussian RF-pulse with a full width at half
maximum (FWHM) of 3.5 ppm (420 Hz) to differentiate phosphocreatine (PCr) [3]. A 3D radially-sampled and density-adapted
[4] balanced
steady-state free-precession (bSSFP) sequence (cf. Fig. 1) was applied [5] with the following measurement parameters: TR=7.21 ms, TE1=2.34 ms,
TE2=4.87 ms, nominal α=30°, TA=30 min, BW=1000 Hz/px, 1000
projections, A0=3.7 mT/m, t0=0.5 ms,
1.5 cm isotropic resolution, 84 averages. In order to enhance the signal-to-noise ratio (SNR), the
absolute
values of the acquisitions from each contrast (Fig. 2A) were summed up (Fig. 2B). A Hamming filter was used to reduce Gibbs ringing and
to further increase the SNR for gridding-reconstructed images (Fig. 2C). To
represent the anatomy of the head, 1H Fast Low Angle Shot (FLASH)
images (TR=8.1 ms, TE=4.9 ms, nominal α=10°, TA=6 min, BW=500 Hz/px, 1 mm isotropic resolution) were acquired. Furthermore, 31P images were iteratively reconstructed using prior knowledge from 1H
data (cf. Fig. 2). Therefore, the reconstructed image (Fig. 2F)
is attained by minimizing the objective function $$ f(x) = \frac{1}{2} \parallel \!A x - y\parallel _{2}^{2} + \sum_{i} \tau_{i} R_{i} $$ where
A denotes the system matrix, describing the imaging process that maps the image
vector x on the corresponding raw data vector y. The regularization terms Ri
are weighted with constant factors τi to enable a manually
adjustable influence of the regularization. While the first term ensures data
consistency by including a squared L2-norm, the second part of the
objective function describes the prior knowledge of the image in terms of the
sum of regularizations. Information from registered 1H images (Fig.
2D) was used to spatially confine the support region. This was done using a
binary mask (Fig. 2E) comprising only brain tissue where PCr is
expected. Hence, non-zero
pixel intensities of the 31P data outside the object, which
originate from noise or artifacts, were suppressed. This regularization is
expressed by
$$ R_{BM}(x) = \parallel \!BM \cdot x\,\parallel _{2}^{2} $$ where BM is a diagonal matrix of ones and zeros
obtained from the binary mask [6]. The iterative reconstruction was performed with 300 iterations and a weighting factor of τ=4. Reconstructed images employing those
parameters led to the lowest deviation to a ground truth image in analytical phantom studies.
Results and Discussion
Fig. 3 illustrates the superposition of anatomical
1H images with physiological
31P acquisitions. While for
gridding-reconstructed images combined with a Hamming filter tissue
boundaries are blurred, the iterative reconstruction yields sharp tissue
boundaries. Furthermore, partial volume effects
as well as Gibbs ringing artifacts are reduced owing to the constraint iterative reconstruction. Consequently, those images represent the real PCr distribution
better than conventionally reconstructed images. In
order to achieve signal-effective
31P acquisitions, the contrasts of
the point-reflected bSSFP sequence were summed up. Due to PCr relaxation times
in the order of seconds, the contrasts of readouts RO
1 and RO
2
differ by less than 10% in terms of SNR. Another aspect of this study is that undersampling
induces a noise-like behavior in the image domain. Hence, the iterative
reconstruction is favored for a radial sampling scheme, which was applied in the measurements.
Conclusion
In this work,
31P/
1H
images of the human brain were examined applying a 3D radially-sampled and density-adapted bSSFP sequence
in combination with different reconstruction algorithms. The iterative
reconstruction is appropriate for mapping regions where sharp tissue
boundaries occur and reduces partial volume effects as well as Gibbs ringing.
Acknowledgements
This work was funded by the Helmholtz Alliance
ICEMED - Imaging and Curing Environmental Metabolic Diseases, through the
Initiative and Networking Fund of the Helmholtz Association.References
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