Elia Tagliani1, Gloria Castellazzi1,2, Andrea De Rinaldis1,2, Fulvia Palesi2,3, Letizia Casiraghi2,4, Elena Sinforiani5, Paolo Vitali6, Nicoletta Anzalone7, Giovanni Magenes1, Claudia AM Gandini Wheeler-Kingshott2,8, Giuseppe Micieli9, and Egidio D'Angelo2,4
1Department of Electrical, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy, 2Brain Connectivity Center, C. Mondino National Neurological Institute, Pavia, Italy, 3Department of Physics, University of Pavia, Pavia, Italy, 4Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy, 5Neurology Unit, C. Mondino National Neurological Institute, Pavia, Italy, 6Brain MRI 3T research center, C. Mondino National Neurological Institute, Pavia, Italy, 7Scientific Institute H. S. Raffaele, Milan, Italy, 8NMR Research Unit, Queen Square MS Centre Department of Neuroinflammation, UCL Institute of Neurology, London, United Kingdom, 9Department of Emergency Neurology, C. Mondino National Neurological Institute, Pavia, Italy
Synopsis
Despite the large number of studies on dementia, efforts to
define a clear profile of cognitive impairment for Vascular Dementia (VaD),as
well as its differentiation from Alzheimer Disease (AD), are still poor. In this
study we tested the power of imaging metrics and adopted a data mining
approach, based on Diffusion Tensor Imaging and resting state fMRI, to assess
the reliability of machine learning approaches for the automated diagnosis of
AD and VaD. Our results show that machine
learning algorithms are able to discriminate VaD from AD, representing a
suitable approach to build an automated diagnostic system for dementia-like
diseases.Target
Researchers and clinicians who are interested in data
mining approach to classify dementia-like diseases.
Introduction
Alzheimer Disease (AD) and Vascular Dementia (VaD)
are two of the most common neurodegenerative kinds of dementia disease. Over the
years, advanced structural and functional MRI techniques, such as
Diffusion Tensor Imaging (DTI) and
resting state functional MRI (rs-fMRI)
have emerged as powerful methods to investigate the signs of neurodegeneration
1,2.
However, despite a large number of studies, efforts to
define a clear profile of cognitive impairment for VaD, as well as its
differentiation from AD, are still poor
3. In this study we tested the power of imaging metrics and adopted a data
mining approach, based on DTI and rs-fMRI, to assess the reliability of machine
learning approaches for the automated diagnosis of AD and VaD.
Methods
31 subjects affected by AD (age 72.88±7.33,
MMSE=15.97±6.38) and 27 subjects diagnosed with VaD (age 76.67±7.77,
MMSE=17.94±4.22) underwent MRI examination using a 3T Siemens Skyra MR scanner
(Siemens, Erlangen, Germany) with a 32-channels head-coil. All patients were
selected based on their neuropsychological examination. 35 healthy controls
(HC), age 69.43±9.65 and MMSE=28.56±1.45, were also studied. MRI acquisitions: 1) DTI: twice refocused SE-EPI (TR/TE=10000/97 ms, 70
slices with no gap, acquisition matrix=120×120, voxel size=2x2x2mm
3,
64 directions, b=1200s/mm
2, 10 volumes with no diffusion
weighting); 2) rs-fMRI: EPI 2D BOLD sequence (TR/TE=3010/20ms,
voxel size=2.5mm isotropic, FOV=224mm, 60 slices for a total of 120 volumes); 3) a 3DT1-weighted scan was also collected with a MPRAGE sequence
(TR/TE/TI=2300/2.95/900ms, flip angle 9°, 256 slices, slice, voxel size=1x1x1.2mm
3,
FOV=270mm) for anatomical reference. From DTI we calculated fractional
anisotropy (FA) and mean diffusivity (MD) maps using FSL
4. Using these maps we extracted mean FA and MD values of 10
brain areas (Fig.1) that resulted as being particularly relevant from a
previous Tract Based Spatial Statistics (TBSS) analysis.
5 For each
subject, rs-fMRI images were preprocessed using FSL
4 and then parcelled
using the automated anatomical labelling (AAL
6) atlas into 116 areas.
For each AAL area we calculated both mean FC value (by averaging the mean value
of signals of all the voxels within the region) and graph metrics using the BCT
7 toolbox. Extracted measures from DTI (mean FA and MD of areas in Fig.1)
and from rs-fMRI (mean FC values and graph metrics of the AAL regions) were used
as input features to compare 4 different classifiers, all implemented in Matlab:
Support Vector Machine (SVM)
8,
Multilayer Perceptron (MLP)
8,
Radial
Basis Function network (RBF
network)
8 and
Adaptive
Neuro-Fuzzy Inference System
(ANFIS)
9. Each classifier was run testing multiple input feature
sets: i) DTI indexes, ii) FC indexes, iii) graph metrics, iv) DTI+FC, v)DTI+graph
metrics. This step allowed us to identify the optimal input set of features to
maximise the classification accuracy. In order to further optimise the classification
performance we applied a feature selection algorithm (ReliefF
8) to rank
and then select the features with higher discrimination ability to construct
the classifier.
Results
The machine learning algorithms were able to
classify AD and HC with accuracy (ACC)=94%, VaD and HC with ACC=96%, AD and
VaD with ACC=92% (Fig.2). In particular, comparing AD vs HC the best
classification performance was obtained using ANFIS using a combined input set
of features of DTI indexes and graph metrics (Fig.2,3), while SVM (with RBF
kernel) showed high classification accuracy using only graph metrics as input
features (AC=93%). Also, results from this comparison confirmed the key role of
the hippocampi and default mode network (DMN) impairment in AD. SVM gave the
highest classification performances when using combined DTI+graph metrics (AC=96%)
and DTI+FC indexes (AC=93%) in discriminating VaD vs HC (Fig.2,4). Furthermore, DTI+graph metrics used as
feature dataset for ANFIS obtained the best classification accuracy when
comparing VaD vs AD (AC=92%, Fig.2,5).
Discussion and Conclusions
Our results showed that
machine learning approaches were able to accurately discriminate both AD and
VaD from HC as well as AD from VaD, while also confirming a differential
involvement of the hippocampi and DMN regions in AD, compared to HC. The
achieved accuracy (ACC>90%) is superior to reported values based on
volumetric measurements
10. SVM and ANFIS emerged as the
most efficient classifiers. Moreover, these algorithms
significantly improved their classification accuracy when using multimodal
feature sets (e.g. DTI+graph metrics) rather than single modality feature sets (e.g DTI
indexes). In particular, the feature set composed by DTI indexes and graph
theoretical measures allowed to accurately discriminate AD, VaD and HC with the
best classification
performances (>90%). Results suggest therefore that machine learning algorithms represent a suitable
approach to build an automated image-based system for advising on clinical
diagnosis of dementia-like diseases.
Acknowledgements
The C. Mondino National Neurological institute (Pavia,
Italy), the University of Pavia and the UCL-UCLH Biomedical Research Centre (London,
UK) for ongoing support.References
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