Hannah Hare1, Robert Frost1, and Daniel Bulte1,2
1FMRIB, NDCN, University of Oxford, Oxford, United Kingdom, 2Department of Oncology, University of Oxford, Oxford, United Kingdom
Synopsis
1mm isotropic diffusion-weighted images were acquired with readout-segmented EPI at 3T to investigate the effects of partial voluming on the IVIM-derived measures of perfusion and blood volume. The maps produced showed no contrast between white and grey matter, and very high signal from CSF. Both the grey and white matter curves were adequately fitted using a monoexponential model, and only the CSF required a biexponential to fit the data. This suggests that the biexponential signal behaviour typically observed at lower resolutions may arise primarily from the CSF rather than the blood compartment.Introduction
Intravoxel incoherent motion (IVIM) is a proposed method of measuring
blood volume and perfusion
1. It relies only on the motion of water within
a voxel, and thus should be capable of measurements throughout the brain,
including white matter. In this study high-resolution IVIM data were acquired
to isolate and compare signals arising from grey matter (GM), white matter (WM) and cerebrospinal fluid (CSF).
Methods
6 subjects were scanned on a 3T Siemens
Prisma with a 32-channel head coil and RESOLVE: a readout-segmented EPI diffusion sequence (rs-EPI) with 1mm
isotropic resolution. To achieve sufficient SNR the 6:14-minute protocol was
repeated 6 times. Due to potential motion, images were not averaged. The rs-EPI sequence was implemented with
TE=69ms, TR=1.6s, BW=766 Hz/pixel, echo-spacing=0.4ms, GRAPPA=2. b-values were
0, 10, 20, 40, 80, 110, 140, 170, 200, 300, 400, 500, 600, 700, 800 and 900s/m2, and
were acquired with Stejskal-Tanner encoding. Images
were corrected for motion and eddy-current distortions. An MPRAGE was acquired
at the same resolution, and segmented using FAST2 to estimate the
fractions of GM, WM and CSF per voxel. Masks were created from
voxels with 100% of each tissue type.
The
diffusion coefficient $$$D$$$, the pseudo-diffusion coefficient $$$D^*$$$ and the fraction
of fast-diffusing spins $$$f_v$$$ , were estimated using a biexponential model,
which was fitted to each voxel in two steps to mitigate overfitting.3 This assumes that
$$$D^*$$$ is substantially larger than $$$D$$$ and may be neglected
for large b-values. First, a monoexponential model was fit to b-values >200
to estimate $$$D$$$:
$$S=S_0e^{-bD}$$
Then the biexponential model was fit to all b-values, with fixed $$$D$$$, to
estimate $$$f_v$$$ and $$$D^∗$$$:
$$S=S_0\{(1-f_v)e^{-bD}+f_ve^{-bD^*}\}$$
$$$S_0$$$ was unconstrained in both
cases and IVIM perfusion was defined as $$$f_vD^*$$$.
Voxelwise
fitting was performed with no smoothing or averaging, and the IVIM-derived
parameter maps were compared to structural images. Correlations between blood
volume fraction $$$f_v$$$ and
GM, WM and CSF fraction of partially-volumed voxels were investigated by
plotting 2D histograms. Box-plots were created to compare the distributions of
$$$f_v$$$ and perfusion in pure
GM, WM and CSF.
Results
Fig.1
shows maps of IVIM parameters from a single subject, alongside a structural
image and the CSF partial-volume estimate map derived from it. Areas with the
highest $$$f_v$$$ correspond to those with the highest CSF fraction, and no
obvious contrast between GM and WM is seen in IVIM maps. Fig.2 shows 2D histograms exploring the relationship
between GM, WM and CSF partial volume estimates (pve) and $$$f_v$$$. No correlation is seen for GM or WM, but a positive trend
is observed for CSF.
Fig.3 compares the distribution of voxelwise $$$f_v$$$ and $$$f_vD^∗$$$ for a single subject, derived only from voxels with no
partial voluming. These show considerably higher $$$f_v$$$ and $$$f_vD^∗$$$ in CSF compared to GM or WM. Extreme outliers were
observed for all tissue types and were excluded from the plots. $$$f_vD^∗$$$ was significantly different in CSF compared to WM
(p<0.001 in all subjects) and GM (p<0.05 in all subjects, and p<0.001
in 4). $$$f_vD^∗$$$ in GM and WM differed significantly in only 3 subjects
(p<0.05), but in all cases the median values were higher in WM than GM.
Discussion
$$$f_v$$$ and $$$f_vD^∗$$$ are elevated in voxels containing
CSF, but no contrast is visible between GM and WM. There appears to be some
consistent correlation between $$$f_v$$$ and CSF fraction, but not with GM
or WM fraction. This strongly suggests that $$$f_v$$$ is
primarily sensitive to voxelwise CSF content and not true capillary blood
volume.
The box-plots confirm that $$$f_v$$$ and $$$f_vD_∗$$$ are highest in the CSF
compartment, and also show that the median $$$f_vD^∗$$$ value is marginally higher in WM
than GM. The same observations were made for all subjects. This result is unphysiological
for a perfusion contrast.
Overfitting may explain the high WM
results. Data were analysed using a biexponential model for all voxels, when the monoexponential fit may suffice. However, by fitting a biexponential to a noisy monoexponential curve,
large values for $$$f_v$$$ can be estimated despite a true $$$f_v=0$$$. The
anisotropy in WM leads to greater variance in signal across diffusion
directions compared to GM, which can masquerade as lower SNR and lead to poorer
fitting.
The
idea that the biexponential form of the diffusion signal arises from CSF
contamination is not new.4 However, the fact that biexponential
behaviour was observed even in 100% CSF voxels, with resulting $$$f_v$$$ of ~0.4, suggests
that IVIM may in fact be measuring CSF motion. In larger voxels, the mixing of
different tissue types is likely an additional contributing factor.
Acknowledgements
MRC UK and EPSRC UKReferences
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