Eun Soo Choi1 and Gary Glover2
1Electrical Engineering, Stanford University, Stanford, CA, United States, 2Radiology, Stanford University, Stanford, CA, United States
Synopsis
In
BOLD fMRI, gradient-echo and spin-echo pulse sequences have been widely used
due to their higher functional sensitivity and spatial specificity, however,
fair comparison between SE and GRE methods has often not been made properly. In
this study, we defined "functional resolution" as a quantitative
metric to evaluate spatial specificity of BOLD contrast fMRI and measured it in
SE, asymmetric spin-echo, and GRE. Then we conducted spatial smoothing to
equalize their functional resolution and compare their functional sensitivity
under the equivalent conditions. Purpose
Spin echo (SE) pulse sequences have not been widely used for fMRI due
to their decreased sensitivity compared to GRE despite higher spatial
specificity
1-3. In this study, the functional sensitivity was
quantified by measuring the number of activated voxels, however, fair
comparison between SE and GRE methods requires that their intrinsic resolution
differences be equalized. We have defined "functional resolution" as a quantitative metric to evaluate
spatial specificity of BOLD contrast fMRI and measured it in SE, asymmetric
spin echo (ASE), and GRE. Using spatial smoothing, we equalized their
functional resolutions and compared functional sensitivity. The results demonstrate
that SE provides the highest spatial specificity and ASE provides higher
spatial specificity than GRE. In comparison with GRE, lightly T2'-weighted ASE
and SE greatly enhance functional sensitivity in all brain regions.
Methods
fMRI Acquisition We scanned 16 healthy
subjects on a 3.0T GE whole-body scanner during breath hold (BH) tasks. Figure
1 shows GRE, ASE and SE pulse sequence diagrams. We chose effective TE = 30ms for the GRE and 65ms for the
ASE that maximized BOLD contrasts at 3.0 T. The ASE had additional
T2'-weighting with Echoshift = -50, -40, -30, -20, -10, 0 (SE), +10ms associated as TE = TH
+ Echoshift. The Echoshift determined the degree of T2'-weighting. Thus, as we
varied Echoshift from -50ms to 0, the
ASE BOLD contrasts properties varied from T2*-weighted GRE-like ASE to
T2-weighted SE-like ASE. Other parameters remained constant throughout all
scans.
fMRI Analysis
& Functional Resolution
We generated activation maps with
correlation analysis. In order to measure functional resolution, we calculated
autocorrelation functions from threshholded activation maps. The functional
resolution was defined as full-width 70% magnitude in both image dimensions, of
the autocorrelation function. Then functional resolutions in 2D direction were
combined into a single geometric mean.
Spatial Smoothing & Functional Sensitivity We performed spatial smoothing in k-space using a 2D
Gaussian kernel and repeated voxel-wise analysis to obtain activation maps. The
Gaussian kernel size was chosen in each slice in order that the functional
resolution of a smoothed ASE was equalized to that of GRE.
Results and Discussion
Functional
resolution Figure
2 shows functional resolutions for BH tasks of a representative slice from ASE
with Echoshift varied and from GRE,
and Fig. 3 shows the averaged functional resolution. These quantitative results
affirm that any set of ASEs provides enhanced functional resolutions compared
with that of GRE at 3T. Specifically, as an ASE approached SE - Echoshift close to 0ms, its functional
resolution tended to be higher.
Spatial smoothing & Functional sensitivity Figure 4 presents the
activation maps before and after spatial smoothing compared with GRE, and Figure
5 shows the averaged percentage of activation in all and SFGs regions. Resolution
equalization increased relative activation greatly, and the
ASEs that were close to SE resulted in significant improvement in functional
sensitivity. Therefore, in the range of negative Echoshift, ASEs with spatial smoothing provided comparable or greater
BOLD contrast with GRE. In susceptibility-compromised regions, while GRE lost
all signal, ASEs retained the activation up to 5% and 6% without/with spatial
smoothing. ASE BOLD contrasts include more
extravascular components than GRE; therefore the smoothed ASE is dominated by
T2-weighted extravascular components while GRE is dominated by T2*-weighted intravascular
components. This is particularly beneficial on lightly T2'-weighted ASE, thus
the optimal Echoshift that gives rise
to the greatest activation is shifted close to 0.
Conclusion
When properly accounting
for resolution differences, lightly T2'-weighted ASE can achieve both high
functional sensitivity and spatial specificity compared with GRE and SE.
Acknowledgements
Funding is supplied by NIH 015891.References
[1] Ogawa, Seiji, et al.
"Brain magnetic resonance imaging with contrast dependent on blood oxygenation."
Proceedings of the National Academy of Sciences 87.24 (1990): 9868-9872.
[2] Yacoub, Essa, et al.
"Spin-echo fMRI in humans using
high spatial resolutions and high magnetic fields." Magnetic resonance
in medicine 49.4 (2003): 655-664.
[3] Duong, Timothy Q., et al. "Microvascular BOLD contribution at 4 and 7 T in the human brain: Gradient-echo and spin-echo fMRI with suppression of blood effects." Magnetic resonance in medicine 49.6 (2003): 1019-1027.