Pedro Lima Cardoso1, Jonathan R. Polimeni2, Benedikt Poser3, Markus Barth4, Siegfried Trattnig1, and Simon Daniel Robinson1
1High Field MR Center, Department of Biomedical Imaging and Image-guided Therapy, Medical University of Vienna, Vienna, Austria, 2Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA, United States, 3Maastricht Brain Imaging Center, Maastricht University, Maastricht, Netherlands, 4Center for Advanced Imaging, University of Queensland, Brisbane, Australia
Synopsis
The present study assesses time-series SNR and residual
aliasing (ghosting) levels in accelerated EPI acquisitions at 7 T using
single-shot (SS), multi-shot (MS), FLASH and FLEET autocalibration signal acquisition
schemes for GRAPPA reconstruction in resting-state and in a chin task (commonly
used in fMRI for presurgical planning), which elicits head motion and, consequently, changes
in ΔB0. FLASH and FLEET acquisitions yielded significantly higher
average tSNR values compared to SS and MS in the chin task and no significant
residual aliasing enhancement in both resting-state and chin tasks.Purpose
To assess
time-series SNR and residual aliasing levels in accelerated EPI acquisitions at
7 T using different autocalibration signal (ACS) acquisition schemes for GRAPPA
reconstruction in a task commonly used in fMRI for presurgical planning which
elicits head motion and changes in ΔB
0.
Introduction
The
conventional means to acquire the autocalibration data required for accelerated
EPI with the GRAPPA parallel imaging reconstruction is either in a single shot
(SS) or, for high GRAPPA factors and resolution, in a ‘consecutive-slice’
segmented (‘multi-shot’ or MS) scheme. This has been shown to be sensitive to
motion and ΔB
0 changes due to respiration
1. Gradient-echo (FLASH)-based
2 and ‘consecutive-segment’ (FLEET)
1 ACS acquisition schemes have been shown to be temporally
more robust, but to our knowledge have only been tested with resting-state fMRI. Some tasks used
in preoperative functional localization of motor and speech areas
3,4 induce motion and ΔB
0 changes during the time series which
may result in reduced time-series SNR (tSNR) (and consequently BOLD
sensitivity), and enhanced residual aliasing (i.e. ghosting). The ACS
acquisition schemes could be expected to perform differently in such circumstances.
In this study, we assess tSNR and ghost levels using SS, MS, FLASH and FLEET
ACS schemes in fMRI acquisitions with a chin task.
Materials
and Methods
7 T fMRI
was acquired in 7 healthy volunteers with 4 ACS schemes (SS, MS, FLASH
2 (acquired with Siemens WIP #676b)
and FLEET
1) while performing 20 runs (5 with
each scheme; 56 volumes per run) of a chin task in a ABABABA (A: rest; B: task)
block design, consisting of opening and closing the mouth with a target frequency
of ~0.5 Hz. Twelve resting state (rs) runs (3 with each scheme; 40 volumes per
run) were additionally acquired in 4 of the participants. Participants were
instructed to stay still during rest and ACS acquisition periods. Image
resolution was 1.5 mm isotropic, GRAPPA 2 and TE/TR=23/2500ms. Forty-four
reference lines were acquired in each protocol. Five dummy excitations were
acquired before the FLEET ACS acquisition and a FLEET flip angle of 10° was
used. Functional runs were slice timing and motion corrected with FSL.
Time-series SNR and Nyquist ghost-to-signal levels
were calculated for both rs and chin tasks in all 4 acquisition schemes,
registered to the first volume of the middle run with FSL, and averaged over runs.
tSNR values were all averaged over the brain and ghost levels were assessed by
calculating the ratio of the average signal in an ROI containing the aliasing
area to the average signal of the brain image. Average tSNR and ghost levels
were calculated across volunteers in all 4 schemes for both rs and chin tasks, and
differences across acquisition schemes were assessed via Wilcoxon paired
t-tests at p<0.05. tSNR and ghost group results were registered to a 7 T EPI
template in MNI space with FSL.
Results
tSNR
and ghost level group results are shown in Figure 1. Higher average tSNR values
were obtained for rs than in the chin task for all acquisition schemes. FLASH
and FLEET yielded the highest average tSNR values in rs and in the chin task. There
were no significant differences in tSNR between ACS schemes in rs. In the chin
task, however, there were significant differences between all pairs of schemes
other than between FLASH and FLEET: {SS-MS: p=0.03; SS-FLASH: p=0.02; SS-FLEET:
p=0.04; MS-FLASH: p=0.02; MS-FLEET: p=0.02; FLASH-FLEET: p=0.09}. Lower but
similar average ghost levels were found in rs for FLASH and FLEET but these
differences were not significant across methods in both rs and chin tasks.
Discussion
tSNR
values were higher in the chin task with FLASH and FLEET ACS than with SS and
MS. This effect was significant, while the slightly better performance of FLASH
and FLEET in the rs was not significant, suggesting that it is important to
assess the performance of parallel imaging reconstruction stability in a task
which elicits motion as well as in the resting-state acquisitions. There was no
significant difference in residual aliasing in both rs and chin tasks,
suggesting that all schemes yield a similar level of ghosting in a
motion-eliciting task.
Conclusion
FLASH
and FLEET acquisitions yielded significantly higher average tSNR values
compared to SS and MS in the chin task and no significant residual aliasing
enhancement in both rs and chin tasks. Since BOLD sensitivity is proportional
to tSNR, this study demonstrates the importance of using acquisition methods in
fMRI that are robust to motion in applications that use motion-evoking paradigms
(e.g. presurgical planning for localization of motor or speech areas), whilst
keeping the residual aliasing at an acceptable level.
Acknowledgements
This
study was funded by the Austrian Science Fund (KLI264).References
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