Daniel Spitzer1, Jochen Bauer1, and Cornelius Faber1
1Department of Clinical Radiology, Muenster, Germany
Synopsis
Line scanning fMRI is a novel technique to probe the
BOLD signal with high temporal resolution, which has been previously
demonstrated in small animals. Here, we implement line scanning fMRI on a
clinical 3 T scanner and probe the BOLD response in human brain with 100 ms
temporal resolution. From our data the hemodynamic response can be derived,
perfectly matching the response function as observed with conventional fMRI
detection methods.Purpose
To assess the feasibility of line scanning BOLD fMRI
on human subjects.
Introduction
Recently, Yu et al. have proposed line scanning fMRI
as an experimental method to probe the blood oxygenation
level dependent (BOLD) effect in the rodent brain with
50 ms temporal resolution [1]. Line canning fMRI trades spatial information for
acquisition speed. It acquires BOLD signal from one “line” through the brain,
which is defined by slice selection and additional saturation slices in plane
(Fig. 1), without performing any phase encoding. Temporal resolution is
therefore defined by the time required for acquisition of one line in k-space
(i.e. TR), which is typically around 50 ms. Here, we have implemented line
scanning fMRI on a clinical MR scanner, and compare the results to conventional
EPI fMRI data and a fMRI protocol using a FLASH sequence from which the line
scanning sequence was derived.
Methods
All measurements were performed on a clinical 3 tesla
Scanner (Siemens Prisma) using a 20 channel head coil and a TE = 30 ms. EPI and
FLASH sequences were used as provided by the vendor. While the EPI sequence (N
slices
= 30, TR = TR
total = 2000 ms) covered the whole brain, only one
slice was acquired with the FLASH sequence (TR
total = 3.5 s/slice,
TR = 40 ms, FA = 22°, matrix size 64 x 64). For line scanning, a modified FLASH
sequence without phase encoding was used (TR = 100 ms, FA = 22°, slice thickness 10 mm, 128 frequency
encoding steps). Frequency encoding was performed along the scanned “line”. Tissue
outside this area of interest was saturated using the vendor provided
saturation module (Fig. 1).
For fMRI a visual stimulation paradigm consisting of
10 s stimulation and 15 s rest (black screen) was applied. In each stimulation block, 5
faces from the Ekman and Friesen collection of emotional faces [2] were presented.
Conventional fMRI data acquired with EPI or FLASH were evaluated using Statistical
Parametric Mapping (SPM8). To obtain the BOLD signal, the voxel cluster with
maximum intensity was selected manually. For this activated region the BOLD
signal time course was extracted without assuming any model.
Line scanning data were Fourier transformed to
yield projections of the line through the brain. Subsequently, signal intensities
were summed over a region of interest, comprising the occipital cortex. Analysis was applied using matlab.
Results
The stimulation paradigm resulted in robust BOLD
activation (2% signal change) of the occipital cortex and the amygdala in the data sets
acquired with EPI (Fig. 2). Data acquired with FLASH showed robust BOLD in the
occipital cortex only (5% signal change). From both data BOLD time courses could be extracted
(Fig. 3 a, b). Line scanning data were
summed over the occipital cortex, allowing to obtain a BOLD time course with 100
ms resolution (Fig. 3c). BOLD amplitude was 4-5%. From
both EPI and line scanning data, BOLD responses were averaged over twelve
stimulations to visualize the hemodynamic response. The response
showed a delayed rise to a maximum that was reached only 13 seconds after
stimulation onset (i. e. 3 s after end of stimulus), before showing a post stimulus undershoot and returning to
base line (Fig. 4).
Discussion
Line scanning fMRI was successfully implemented on a
clinical MR scanner and provided reliable BOLD signal of 4-5% amplitude in
response to a visual stimulation paradigm. The observed BOLD time course perfectly matched the time course observed with a conventional EPI sequence. Currently the temporal resolution is
limited to 100 ms, due to long saturation times required to achieve satisfying
suppression of signal outside the “line”. In deeper brain regions (amygdala)
line scanning fMRI failed to detect BOLD signal, presumably due to B
1 inhomogeneities, resulting in lower sensitivity or deviating saturation profiles. However,
with optimized saturation methods line scanning fMRI may reach temporal
resolutions below 50 ms and become a technique of high potential to boost
temporal resolution in human fMRI.
Acknowledgements
No acknowledgement found.References
[1] Yu X, et al. (2014), Nature Methods 11, 55-58
[2] Ekman P, Friesen WV. Pictures of Facial Affect. Palo Alto:
Consulting Psychologists; 1976