Alexander Beckett1, An T Vu1,2, Boris Keil3, Kawin Setsompop3, Lawrence L Wald3, Scott Schillak4, and David A Feinberg1,2
1Helen Wills Neuroscience Institute, University of California, Berkeley, CA, United States, 2Advanced MRI Technologies, Sebastopol, CA, United States, 3Martinos Center for Biomedical Imaging, Charlestown, MA, United States, 4Virtumed, LLC, Minneapolis, MN, United States
Synopsis
The use of array coils
with smaller loop sizes allows increased signal to noise ratio close to the coils with
decreased coverage of the brain. By focusing on cortical imaging (MR
Corticography, MRCoG), this increased SNR can be leveraged to allow ultra-high
resolution neuroimaging and fMRI. We assess array coils with varying loop
sizes (50mm-20mm) in phantom and with 8-channel arrays (70mm, 40mm, 30mm) in brain at ultra-high resolution
(≤ 500 micron isotropic voxels), and show increases in SNR and BOLD contrast
in the human cortex as loop size decreases.Target Audience
Neuroimaging
scientists, neuroscientists and clinicians interested in high resolution MRI and fMRI and
advanced receiver coil hardware.
Purpose
To selectively perform
imaging of human neocortex at ultra-high resolution, referred to as MR Corticography (MRCoG), receiver
coil sensitivity can be focused on the peripheral region of the brain to
maximize SNR (Figure 1). Use of smaller loops in high-density coil
arrays allow for higher signal at shallower brain depths, introducing a trade
off between SNR and coverage depth in the brain (Figure 2). Previous work has
shown that these types of coils can achieve higher cortical SNR than standard
whole-brain coils [1], particularly at higher resolutions, but the exact loop
size to achieve the ideal balance between increased signal and sufficient
coverage is unknown.
Methods
To assess the gains
achievable with such novel coil designs, data were collected on three 8-channel
coil arrays (Virtumed, LLC), with 70, 40 and 30mm loop diameters. Data were
collected on a Siemens 7T Scanner, using simultaneous multi-slice (SMS) EPI
[2,3] with a voxel size of 500μm isotropic, SMS 2, IPAT 2, Flip Angle 80°, partial
Fourier 5/8, TR=3000ms, TE=26ms, Matrix Size
180x160, 62 slices). Temporal SNR (tSNR) was calculated by dividing the mean of
the time-series by the standard deviation, across 25 TRs. BOLD activation
was also measured using a visual localizer paradigm, consisting of a flashing
checkerboard pattern alternating with a blank screen (18s on, 18s off, repeated
5 times per scan). The visual localizer scans were repeated 3 times for each
coil. BOLD activation was also measured using 450μm isotropic voxels (imaging
factors same as above except: TE=31ms, Matrix Size 200x180, 50 slices) on the
array with the smallest loops (30 mm), using the same visual localizer
paradigm, repeated 4 times.
Results
The smaller loop
diameters yield increased signal in superficial areas of the brain, with this
specificity increased for the smallest loops (Figure 3). This increase in
superficial signal led to a reduction in signal at the deepest brain areas.
Lower signal in one brain hemisphere was likely due to B1 field inhomogeneity
using a single transmitter loop in these test coils. For the resolution used
(500μm isotropic voxels), the 70mm loop size yielded very low tSNR values and less BOLD activation compared to the loop
sizes of 40mm and 30mm. Such gains in tSNR yield increased activation in visual
stimulation paradigms, allowing high-resolution fMRI in visual cortex (Figure
4). Robust BOLD activation was achievable at very high isotropic resolution, 450μm, in only 12 minutes of scan time (Figure 5).
Discussion
These results indicate
that array coils with smaller loop sizes give sufficient gains in SNR to allow
ultra-high resolution fMRI, potentially useful for studying laminar and
columnar organization in the human neocortex. Based on these findings of
gains in SNR using receiver arrays with small loop diameter, future design of
larger arrays with 128 – 256 coil elements using small coils should provide
highest SNR in whole brain imaging targeted to neocortex[4]. Such large
arrays with small coils may likely have additional gains in spatial sensitivity
for acceleration with SMS and parallel imaging.
Conclusion
Receiver coil arrays with
small loop diameter increase SNR in the peripheral cortex to achieve high
resolution in fMRI and neuroimaging.
Acknowledgements
Support:
NIH BRAIN Initiative grant- 1R24MH106096References
[1] Beckett et al, 6726, ISMRM 2015, [2] Moeller
et al, 63(5), MRM 2010, [3] Feinberg et al, 5(12), PLoS One 2010, [4] Wiggins et al, 62(3), MRM 2009