Elisenda Bonet-Carne1, Alessandro Daducci2,3, Eleftheria Panagiotaki1, Edward Johnston4, Nicola Stevens4, David Atkinson4, Shonit Punwani4, and Daniel C Alexander1
1Centre for Medical Image Computing, University College London, London, United Kingdom, 2Signal Processing Lab (LTS5), École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland, 3University Hospital Center (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland, 4Centre for Medical Imaging, University College London, London, United Kingdom
Synopsis
The aim of this study is to
extend the AMICO framework to the VERDICT model-based diffusion-weighted MRI (DW-MRI)
technique and to evaluate its performance to prostate cancer imaging. DW-MRI
was acquired for 4 subjects and the VERDICT model was fitted to the data using
both fitting procedures. In both cases similar differences in parameter values
between tumour and normal tissue were found. The AMICO formulation reduces the computation
time for VERDICT and produces parameter maps that are more homogeneous than
those obtained with the original fitting. The AMICO formulation reflects the
microstructural differences in a clinically practical time.Purpose
The aim of this study is to
extend the AMICO1 (Accelerated Microstructure Imaging via Convex
Optimisation) framework to the VERDICT2,3 (Vascular, Extracellular,
and Restricted Diffusion for Cytometry in Tumours) model-based
diffusion-weighted MRI (DW-MRI) technique and to evaluate its performance in
the clinical application for prostate cancer imaging.
Prostate cancer is the most common cancer among
men in all economically developed countries4. A non-invasive method of
diagnosis and grading would revolutionise clinical practice. VERDICT, a
model-based technique, for characterising microstructural tissue parameters has
shown promise in preclinical studies2 and in a pilot clinical
setting3 for discriminating normal and malignant prostate tissue. However,
VERDICT uses a computationally expensive non-linear fitting procedure to estimate
model parameters from the data, which limits its use in large cohort studies and
real-time clinical applications. Recently, ultrafast fitting algorithms, such
as the AMICO framework, have been developed to address the
computational cost of model-based microstructure-imaging techniques. Through
linearization and convex optimisation, AMICO reduces dramatically the
computational cost of microstructure imaging techniques in the brain and
locates the global minimum parameter values more reliably.
Methods
4 subjects suspected for prostate
cancer with a previous multiparametric prostate MRI (mpMRI) were scanned for
VERDICT analysis. For each subject DW-MRI was performed using a 3T scanner
(Achieva, Philips Healthcare, Netherlands) using a pulse-gradient spin-echo
sequence and a 32 channel cardiac coil with b values of 90-3000s/mm in 3 orthogonal directions,5 the imaging parameters are summarised in Table 1. Data was normalised with a b=0 image for every echo time to avoid T2 dependence. In one case (subject 4), the scan was repeated after a 2-minute interval.
MR datasets were analysed
with Osirix Version 7.0 (Bernex, Switzerland). For each subject a board certified
radiologist (EJ) manually contoured three regions of interest (ROIs): (1) the
whole prostate, (2) a region corresponding to tumour tissue and (3) a region
for normal tissue on the same slice.
The VERDICT model was
fitted to the data in each voxel using both the original non-linear fitting
algorithm (ORIGINALVERDICT) and the AMICO framework adapted for
VERDICT (AMICOVERDICT). ORIGINALVERDICT uses an iterative
optimization procedure2,3 that accounts for local minima and Rician
noise, as implemented in the open-source Camino toolkit.6 AMICOVERDICT
expresses the VERDICT model as a linear system and leading to a convex
optimization problem, which is solved to fit the model to the data using freely
available code (https://github.com/daducci/AMICO/).1 Both procedures
fit the same set of parameters.
The time required to fit the models to the data
is compared. For subject 4 the repeatability of both models was also tested. All
the experiments have been conducted on a 3.1 GHz Intel Core i7, 8 GB ram DDR3,
without multi-threading or parallel computing.
Results
Subjects’ ages range 62.7
to 74.4 years. In all cases a biopsy performed within a week of the scan
confirmed cancer with Gleason scores7 of 3+4. The computation time
for VERDICT is reduced with the AMICOVERDICT formulation, from 1.18s/voxel
to 0.78ms/voxel, the exact time required to compute the parameter maps is
reported in Table 2.
Figure 1 shows that AMICOVERDICT
parameter maps are more homogeneous (less noisy) than those obtained with the
original fitting. This is most likely because AMICO is less sensitive to local
minima – the more homogeneous minimum objective function maps (the numerical
values are not directly comparable) support this. Both models show similar differences
in parameter values between tumour and normal tissue, for example, in both
cases fIC (Intracellular volume fraction) is higher and fEES
(Extracellular-Extravascular volume fraction) is lower in tumour tissue
compared with normal tissue. However, the numerical values in Figure 2 show
differences between the two estimation procedures, although both estimates are
physiologically plausible. Both procedures provide similar reproducibility
between acquisitions as illustrated in Figure 3.
Discussion
The principal benefit of the
AMICO framework is that provides an acceleration factor of several orders of
magnitude compared with non-linear fitting, which we demonstrate here for the
VERDICT model. AMICO may also achieve more robust and repeatable parameter
estimates, although further work on a larger cohort and comparison against
histology is required to test this. Improved location of the global minimum
parameter values may also enable relaxation of some of the assumptions in the VERDICT
model, such as fixed diffusivities and zero permeability, thus supporting more
detailed and accurate microstructural assessment – future work will also
evaluate this possibility.
To conclude, AMICOVERDICT
reflect the microstructural differences between tumours and normal tissue in a
clinically practical time. Results should be evaluated in larger cohorts to
test the parameters correlation with cancer grade.
Acknowledgements
No acknowledgement found.References
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