Francisco Lagos Fritz1, Sean Foxley2, Shubharthi Sengupta1, Robbert Harms1, Svenja Caspers3, Karl Zilles3, Desmond HY Tse1, Benedikt Poser1, Karla L Miller2, and Alard Roebroeck1
1Dept. of Cognitive Neuroscience, Faculty of Psychology & Neuroscience, Maastricht University, Maastricht, Netherlands, 2FMRIB Centre, University of Oxford, Oxford, United Kingdom, 3Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Jülich, Germany
Synopsis
The investigation of whole human brains post mortem with large bore
systems can achieve a resolution considerably superior to that achievable
in-vivo. However, the achievable resolutions and contrast are limited,
especially for diffusion MRI (dMRI), by gradient performance, non-optimized
RF-coils, and RF-field inhomogeneity and decreasing T2 with increasing B0. Here we report on ultrahigh
resolution (450µm) diffusion imaging of the whole human brain showing exquisite
spatial definition. This is achieved using a specialized 9.4T 8Ch parallel
transmit (pTx), 24Ch receive RF-coil and a diffusion weighted steady state free
precession (dwSSFP) sequence extended with a kt-points excitation pulse for B1+
homogenization
Introduction
Pre-clinical MRI systems (animal scanners or
spectroscopy systems) can be used to examine small human brain tissue samples
post mortem and investigate fundamental neuroanatomy questions at the mesoscale
1-4. These studies benefit from the advantages of high field strength and
gradient performance, but are limited to relatively small tissue samples. The
investigation of whole human brains post mortem with large bore systems can
achieve a resolution considerably superior to that achievable in-vivo
5-7. However,
the achievable resolutions and contrast are limited, compared to small sample
studies, by gradient performance, non-optimized RF-coils, and RF-field
inhomogeneity over the brain at high main field strengths (≥7T). For diffusion
MRI (dMRI), in particular, gradient strength, decreasing T2 with increasing B
0
and the limited SNR per unit time achievable with 3D segmented pulsed gradient
spin echo (PGSE) sequences hinder truly high resolution whole brain diffusion
MRI acquisitions. Here the aim is to use
a specialized 9.4T 8Ch parallel transmit (pTx), 24Ch receive RF-coil for whole
post mortem human brains and a diffusion weighted steady state free precession
(dwSSFP) sequence to enable high time-efficiency in ultrahigh resolution diffusion
imaging of the whole human brain.
Methods
One human post-mortem hemisphere from a subject
without neurological or psychiatric disease was used for the present study. The
hemisphere was enclosed in a 3D conformal container model suitable for post mortem
human brains (Figure 1A) together with a second hemisphere. It was inserted into the specialized 9.4T 8Ch parallel
transmit (pTx), 24Ch receive RF-coil built onto a conformal receive
former modeled as a precise fit around the container (Figure 1B&C). Experiments were performed with a 9.4T 820cm
bore human MR scanner (Magnetom 9.4T, Siemens Medical Solutions, Erlangen,
Germany) with an 80mT/m, 330T/m/s head gradient system using 8-channels of its 16-channel parallel transmit system. For the pTx pulse design, transmit profile (B1+) maps from
each of the transmit channels were acquired with a T2* compensated version of
DREAM
8. For reference, the transmit coil's default circularly polarized (CP)
mode RF phase setting was used. Diffusion MRI was performed with an optimized
dwSSFP sequence
9 modified to use a kt-points composite
excitation pulse
10 in order to optimize for B1+ homogeneity. A kt-points pulse with 6 subpulses was calculated using the MLS approach
11. Other imaging parameters were TE/TR = 18ms/28ms, BW = 80Hz/Px,
EPI-factor = 1, q = 80 (effective b = 240 s/mm
2, 6 directions), 220 (effective
b = 2000 s/mm
2,12 directions) and 300 (effective b = 4000 s/mm
2,
48 directions), acquired at ~48min/volume. Analysis was performed with the
standard spin-echo DTI model using FSL v4.0.1
12.
Results and discussion
Transmit B1+ maps for the CP mode (Figure 2A, top)
show the necessity for pTx at 9.4T for whole human brain samples. Large bands
of (near) signal dropout can be seen which translate to dwSSFP results (2B,
top). Homogenized B1+ by the kt-points technique vastly improves the transmit
profile (2A, bottom) and achieves homogeneous signal and high contrast in 450μm resolution whole brain dwSSFP (2B, bottom).
Figure 3 shows the exquisite spatial definition in DTI maps at this resolution.
Conclusion
Ultra-high field strengths, a specialized whole
brain ex-vivo RF-coil and high efficiency pTx enabled dwSSFP help to achieve 450μm resolution diffusion imaging of the whole human brain. With further
developments in data analysis and modeling this data can play an important role
in mesoscale human connectomics and microstructure studies help to bridge the gap between in-vivo MRI studies and post-mortem histology.
Acknowledgements
No acknowledgement found.References
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