Whole human brain diffusion MRI at 450µm post mortem with dwSSFP and a specialized 9.4T RF-coil
Francisco Lagos Fritz1, Sean Foxley2, Shubharthi Sengupta1, Robbert Harms1, Svenja Caspers3, Karl Zilles3, Desmond HY Tse1, Benedikt Poser1, Karla L Miller2, and Alard Roebroeck1

1Dept. of Cognitive Neuroscience, Faculty of Psychology & Neuroscience, Maastricht University, Maastricht, Netherlands, 2FMRIB Centre, University of Oxford, Oxford, United Kingdom, 3Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Jülich, Germany

Synopsis

The investigation of whole human brains post mortem with large bore systems can achieve a resolution considerably superior to that achievable in-vivo. However, the achievable resolutions and contrast are limited, especially for diffusion MRI (dMRI), by gradient performance, non-optimized RF-coils, and RF-field inhomogeneity and decreasing T2 with increasing B0. Here we report on ultrahigh resolution (450µm) diffusion imaging of the whole human brain showing exquisite spatial definition. This is achieved using a specialized 9.4T 8Ch parallel transmit (pTx), 24Ch receive RF-coil and a diffusion weighted steady state free precession (dwSSFP) sequence extended with a kt-points excitation pulse for B1+ homogenization

Introduction

Pre-clinical MRI systems (animal scanners or spectroscopy systems) can be used to examine small human brain tissue samples post mortem and investigate fundamental neuroanatomy questions at the mesoscale1-4. These studies benefit from the advantages of high field strength and gradient performance, but are limited to relatively small tissue samples. The investigation of whole human brains post mortem with large bore systems can achieve a resolution considerably superior to that achievable in-vivo5-7. However, the achievable resolutions and contrast are limited, compared to small sample studies, by gradient performance, non-optimized RF-coils, and RF-field inhomogeneity over the brain at high main field strengths (≥7T). For diffusion MRI (dMRI), in particular, gradient strength, decreasing T2 with increasing B0 and the limited SNR per unit time achievable with 3D segmented pulsed gradient spin echo (PGSE) sequences hinder truly high resolution whole brain diffusion MRI acquisitions. Here the aim is to use a specialized 9.4T 8Ch parallel transmit (pTx), 24Ch receive RF-coil for whole post mortem human brains and a diffusion weighted steady state free precession (dwSSFP) sequence to enable high time-efficiency in ultrahigh resolution diffusion imaging of the whole human brain.

Methods

One human post-mortem hemisphere from a subject without neurological or psychiatric disease was used for the present study. The hemisphere was enclosed in a 3D conformal container model suitable for post mortem human brains (Figure 1A) together with a second hemisphere. It was inserted into the specialized 9.4T 8Ch parallel transmit (pTx), 24Ch receive RF-coil built onto a conformal receive former modeled as a precise fit around the container (Figure 1B&C). Experiments were performed with a 9.4T 820cm bore human MR scanner (Magnetom 9.4T, Siemens Medical Solutions, Erlangen, Germany) with an 80mT/m, 330T/m/s head gradient system using 8-channels of its 16-channel parallel transmit system. For the pTx pulse design, transmit profile (B1+) maps from each of the transmit channels were acquired with a T2* compensated version of DREAM8. For reference, the transmit coil's default circularly polarized (CP) mode RF phase setting was used. Diffusion MRI was performed with an optimized dwSSFP sequence9 modified to use a kt-points composite excitation pulse10 in order to optimize for B1+ homogeneity. A kt-points pulse with 6 subpulses was calculated using the MLS approach11. Other imaging parameters were TE/TR = 18ms/28ms, BW = 80Hz/Px, EPI-factor = 1, q = 80 (effective b = 240 s/mm2, 6 directions), 220 (effective b = 2000 s/mm2,12 directions) and 300 (effective b = 4000 s/mm2, 48 directions), acquired at ~48min/volume. Analysis was performed with the standard spin-echo DTI model using FSL v4.0.112.

Results and discussion

Transmit B1+ maps for the CP mode (Figure 2A, top) show the necessity for pTx at 9.4T for whole human brain samples. Large bands of (near) signal dropout can be seen which translate to dwSSFP results (2B, top). Homogenized B1+ by the kt-points technique vastly improves the transmit profile (2A, bottom) and achieves homogeneous signal and high contrast in 450μm resolution whole brain dwSSFP (2B, bottom). Figure 3 shows the exquisite spatial definition in DTI maps at this resolution.

Conclusion

Ultra-high field strengths, a specialized whole brain ex-vivo RF-coil and high efficiency pTx enabled dwSSFP help to achieve 450μm resolution diffusion imaging of the whole human brain. With further developments in data analysis and modeling this data can play an important role in mesoscale human connectomics and microstructure studies help to bridge the gap between in-vivo MRI studies and post-mortem histology.

Acknowledgements

No acknowledgement found.

References

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Figures

Figure 1: A) The opened transparent conformal whole brain container B) The RF-coil array closed, viewed from the back C) The closed container in the opened RF-coil array.

Figure 2: A) B1+ maps showing transmit efficiency and homogeneity over the brain. Top: transmit phases in a standard CP mode. Bottom: kt-points (6 pulses) transmit phases and magnitude optimized for homogeneity. B) Corresponding whole brain dwSFFP (sagittal slice) achieved with CP (top) and kt pulses (bottom).

Figure 3: The fractional anisotropy (FA) map (left) and Mean Diffusivity (MD) map (right) from DTI Analysis for the control hemisphere (see inset).



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
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