Mouse Brain Microscopy with Loop Gap Resonator at 15T
Ouri Cohen1,2, Frederick A. Schroeder 1,2, and Jerome L. Ackerman1,2

1Athinoula A. Martinos Center, Charlestown, MA, United States, 2Radiology, Massachusetts General Hospital, Boston, MA, United States

Synopsis

Construction of a loop-gap-resonator RF coil for MR microscopy of ex vivo mouse brains at 15T is described. The large signal obtained allowed acquisition of 20μm3 isotropic voxels, the highest resolution yet achieved in MR mouse brain imaging. Importantly, the high resolution allowed clear identification of multiple brain structures and will be of interest to researchers working with various mouse models.

Introduction

Magnetic resonance microscopy is a promising tool for high resolution 3D imaging of ex vivo soft tissue specimens since it allows morphometric measurements and non-invasive imaging of multiple tissue contrasts. Achieving micron-scale resolutions remains a technical challenge however due to the rapid signal-to-noise degradation with increasing magnification. Special consideration in RF coil design is thus required. In this work we describe the construction of a remotely-tunable bridged loop-gap resonator RF coil optimized for scanning perfusion-fixed mouse brains at 15T. The optimized coil allowed acquisition of 20 μm3 isotropic voxels that, to our knowledge, represent the highest resolution yet achieved in MR imaging of the mouse brain.

Methods

Coaxial cylinders made of plastic (outer cylinder) and quartz (inner cylinder), with dimensions as shown in Figure 1, were used as formers for the coupled resonator devices. The gap in the inner cylinder was bridged by a 24 mm long × 8 mm wide copper tape to improve the magnetic field homogeneity [1][2]. Remote tuning was achieved by rotating the cylinders with respect to each other and adjusting the height of the tuning loop [3]. All experiments were conducted on a Magnex (Agilent, Yarnton, Oxford, UK) 15 T 130 mm horizontal bore magnet equipped with a Resonance Research (Billerica, MA, USA) 60 mm ID gradient insert and 2370 mT/m maximum gradient interfaced to a Siemens Medical Systems (Erlangen, Germany) console. The coil’s B1 map was experimentally measured on a water phantom using the manufacturer’s mapping sequence and compared to maps of a simulated coil model designed in HFSS (Ansys, Inc., Canonsburg, PA, USA). Mouse brain experiments were conducted, with the approval of the animal IRB committee, on freshly dissected mouse brains (Fisher Scientific, Inc., Waltham, MA, USA) placed in sodium acetate buffered 10% formalin for a week then transferred to a 4mM solution of Magnevist (Bayer Healthcare) in the formalin solution for another week to shorten relaxation times. The sample was immersed in liquid fluorocarbon (Fomblin) and degassed in a 50 Torr vacuum to remove tissue air bubbles. The brain was scanned using a 3D GRE sequence with the following parameters: flip angle=45°, FOV=12.4 mm3, matrix size=6203, TE=3.79ms, NEX=8 and TR=30ms which was the shortest TR achievable on this system without overheating the gradient coil. The relatively long TR resulted in a total scan time of 27 hours.

Results

Axial slices from the (a) simulated and (b) experimental B1 maps are shown in Figure 2. The mean of the normalized experimental B1 map was 0.91 ± 0.18, similar to the 0.93 ± 0.05 of the normalized simulated map. The acquired mouse brain data is shown in Figures 3a-c for the coronal, axial and sagittal orientations. A comparable slice from the Allen Developing Mouse Brain Atlas [4] is shown in Figure 3d for comparison and identification of the various brain structures visible in the images. Some of the visible structures include the corpus callosum, dentate gyrus and the stratum lacunosum-moleculare.

Discussion

The proposed coil benefits from a homogenous excitation, as shown by the simulated and experimental B1 maps (Figure 2). Coil dimensions were expressly selected to maximize the filling factor of the mouse brain specimens which yielded high resolution images (Figure 3). Although it was first introduced nearly thirty years ago, to our knowledge this is the first application of an LGR based coil design at 15 T The high resolution and simple construction of our coil allows precise measurements of distinct brain regions which is important in studies of genetic or neurological pathologies. A limitation of this coil design is that it is not suitable for larger samples or in vivo imaging. The long scan time, however, is a result of limitations in our system, not the coil, and can easily be reduced with adequate gradient cooling.

Conclusion

We have demonstrated the utility of an RF coil that is simple to construct and allows high resolution imaging of ex-vivo mouse brains at ultra high fields. The voxel volumes acquired with this coil represent the smallest yet achieved on a mouse brain.

Acknowledgements

Supported in part by the Athinoula A. Martinos Center for Biomedical Imaging and the Center for Functional Neuroimaging Technologies (funded by NIH grant P41-EB015896)

References

[1] Koskinen et al, 1992; 98:576-588 [2] Ono et al, MRM 2002; 47:415-419, [3] Mehdizadeh et al, IEEE Trans. On Microw. Theory Tech., 1983; 31:1059-064, [4] Allen Institute for Brain Science. Allen Developing Mouse Brain Atlas [Internet]. Available from: http://developingmouse.brain-map.org.

Figures

Figure 1: Exploded view of the coil design. Gross frequency tuning was done by rotation of the concentric resonators. No other capacitors were needed for tuning. A copper foil (not shown) was used to improve the RF homogeneity. Loop height adjustments with gear and rack allowed fine tuning of the resonance frequency while inside the scanner.

Figure 2: Normalized simulated (a) and experimental (b) B1 maps obtained using a 13 mm diameter distilled water phantom. Differences in the location of the maxima between the two B1 maps are due to coil placement. Homogeneities of the simulated and experimental B1 maps were 0.93 ± 0.05 and 0.91 ± 0.18.

Figure 3: Coronal (a), axial (b) and sagittal (c) slices from the mouse brain acquired at 20μm3 resolution, the highest resolution achieved to date in MR mouse brain imaging. A coronal slice from the Allen Developing Mouse Brain Atlas is also shown to facilitate identification of various brain structures. Note the large number of structures visible including the corpus callosum, dentate gyrus and the stratum lacunosum-moleculare.



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
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