Adam Scott Bernstein1, Derek Pisner2, Aleksandra Klimova2, Lavanya Umapathy3, Loi Do1, Scott Squire4, Scott Killgore2, and Theodore Trouard1
1Biomedical Engineering, University of Arizona, Tucson, AZ, United States, 2Psychiatry, University of Arizona, Tucson, AZ, United States, 3Electrical and Computer Engineering, University of Arizona, Tucson, AZ, United States, 4Radiology, University of Arizona, Tucson, AZ, United States
Synopsis
Multiband imaging allows for greater imaging speeds when collecting diffusion weighted MR images. As shown in this work, this saving in time results in small changes in several stages of diffusion image processing including tensor fitting and the associated calculation of scalar values such as FA, fiber orientation distribution calculation as in constrained spherical deconvolution, and tractography.Introduction
One of the
largest obstacles preventing high angular resolution diffusion imaging (HARDI) and
multi shell diffusion-weighted imaging from being incorporated into standard
diffusion MRI (DMRI) protocols is the large time burden required to collect
sufficient numbers of images with different direction encodings directions and
b-values. Recently, multi-band techniques
1,2, which excite and collect data from multiple slices simultaneously, have
greatly increased the speed of acquisition and hold tremendous potential for
extending the range of DMRI sequences that can be carried out within research
or clinical protocols. To date, however,
there has been little validation of the techniques in terms of the effects of
multiband acceleration on resulting diffusion parameters. In this study, we have explored the
differences of DMRI data collected with and without MB acceleration, and
investigate the effects that MB acceleration has on resulting DMRI parameters.
Methods
Seven healthy
subjects were scanned on a 3T Siemens Skyra with a 72 direction, b=1000 s/mm
2 protocol. Without MB acceleration, TR/TE
= 9600/88 ms. With a MB acceleration of
2, TR/TE = 5000/102 ms and with MB acceleration of 3, TR/TE = 4000/102 ms. Six
b=0 images were obtained in each of the studies and two additional b=0 images
were collected with reverse phase encoding direction to correct EPI distortions
using the TOPUP routine within FSL
3,4.
Images were also corrected for eddy currents using the EDDY routine in
FSL. LPCA denoising as described by Manjon et al.
5 was
implemented in MATLAB.
MRTrix was
used to generate FOD maps as well as to perform probabilistic tractography and
track density image formation
6,7. MATLAB 2015a was used for statistical analysis
and calculation of FOD coefficients for constrained spherical deconvolution as described by Tournier et al.
8.
Results and Discussion
As seen in Fig 1, is apparent that the diffusion images produced after preprocessing steps are quite similar across all levels of acceleration, but it should be noted that there are subtle differences throughout the dataset that distinguish images collected without multiband acceleration and those collected with it. Differences in the data become more apparent when the parameters, such as FA, are compared as shown in Fig 2. The FA from several white matter voxels in an image with no multiband acceleration is plotted against the FA from those same voxels from an image with 2x acceleration (A) and 3x acceleration (B). It is clear that the values of FA are similar, but not identical.
The fiber orientation distribution functions generated using the constrained spherical deconvolution technique also vary. Fig 3 shows the FODs from a single voxel in a region of crossing fibers (B-D) from different amounts of multiband acceleration, and from a single voxel within the corpus callosum (E-G). Of note, the primary diffusion directions seem to remain in tact in both voxels, but the FODs in the region of crossing fibers appear to lose some of their angular resolution as the multiband acceleration increases. This observation is further validated in figure 4B, which plots each of the spherical harmonic coefficients used to create the FODs in Fig 3(B-D). Lower order coefficients are very similar for all levels of multiband acceleration, but begin to deviate from as the order increases. This pattern is also seen in the coefficients of the FODs in Fig 3(E-G), plotted in Fig 4A, but the coefficients do not vary as much until higher order coefficients.
Finally, the results of probabilistic tractography appear to remain largely intact despite some of the differences discussed above in earlier processing steps. While there are some minor variations between the tractography results (Fig 5), all of the major, and most minor pathways appear to be in tact. Track density imaging results (not shown) indicate that as more tracts are traced out, the more similar the tractography results are.
Conclusions
While there are subtle differences between data collected with and without multiband acceleration throughout all stages of data processing and analysis, it is difficult to determine how these differences truly affect the results of a diffusion study, given that there is no gold standard other than a sequence without multiband imaging. Despite some visually apparent differences in FODs calculated at some locations in the brain, tractography results seem to remain intact.
Acknowledgements
NIH Grant T32-EB000809
Department of Defense Grant W81XWH-12-1-0386
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