Anthony N Price1, Jana Maria Hutter1, Lucilio Cordero Grande1, Emer Judith Hughes1, Kelly Pegoretti1, Andreia Oliveira Gaspar1, Laura McCabe1, Mary Rutherford1, and Joseph V Hajnal1
1Centre for the developing brain, King's College London, London, United Kingdom
Synopsis
This
abstract demonstrates combined multiband and multiplex imaging for
fetal EPI based sequences such as used in diffusion and functional
MRI. This application lends itself naturally to multiplex imaging,
due to PNS and noise restrictions, EPI readout speeds are inherently
limited so offsets the inevitable TE penalty from multiplex imaging.Introduction:
The short acquisition
time of single-shot Echo Planar Imaging (ssEPI) and its ability to
freeze intra-slice motion makes it ideal for both functional (fMRI)
and diffusion (dMRI) studies in the fetus. Its efficiency depends
both on in-plane acceleration, the speed of k-space transversals and
the time for any contrast weighting which needs to be performed for
every slice. Both the long diffusion preparation and the longer echo
times used in fMRI to maximize BOLD contrast contribute to
inefficiency in ss-EPI acquisitions. Beside Multi-band (MB) imaging,
which reduces the total acquisition time by acquiring multiple
simultaneous slices and using the coil sensitivities to unfold,
multiplex (MP) imaging has also been proposed [1,2]. Here, multiple
slice locations are excited by sequential excitation pulses separated
by a frequency offset, and read-out interleaved within an EPI echo
read-out train (Fig. 1). The time required for the additional
encoding and excitation pulses leads to a penalty in echo time (TE)
and EPI readout duration. However, fetal imaging, has imposed
limitations on gradient switching due to acoustic noise
considerations and PNS limits which increase echo spacing and thus
may be an ideal candidate for multiplex imaging.
This abstract
demonstrates a combined multiband-multiplex strategy with MB
refocusing pulse to refocus all excited locations, from both MB and
MP slices. This removes the need to have a widened slice refocus
pulse as originally proposed [1] allowing MP and MB slices to be
interleaved with constant slice separation leading to a uniform final
slice stack.
Methods:
To allow safe
operation for fetal imaging, the acoustic noise generated by the
sequence was reduced using sinusoidal read-out at a fixed frequency,
a constant phase encoding gradient and a strategy to combine the
butterfly refocusing crushers with the diffusion gradients (Fig. 1)
is used. Furthermore, the slice refocusing gradients between both
excitation pulses are combined to avoid sharp gradient rises.
In total, MBxMP
individual slices are excited and read-out within each EPI read-out.
While the excitation pulses may be single-band or MB pulses, in this
implementation the refocusing pulse is multiband accelerated with a
factor of MB x MP. All excited slices are separated by a fixed gap
of FOV (slice direction)/(MPxMB) (see Fig. 2a). To reduce pulse
extension due to peak b1 demands, the optimal phase combination which
produces amplitude (only) modulated pulses is used [3]. To limit TE
difference between the two multiplex excitations, asymmetric pulses
are used, the second being time reversed to minimise slice excitation
time differences.
For read encoding,
the gradient area between excitation pulses (Gc) is used to control
the separation of the 2MP k-space centres (separation shown in green
in Fig. 2b), the pre-winder gradient (Gp) is adapted accordingly to
cover the desired resolution (red in Fig. 2b).
While the standard
setting for two maximally separated fully acquired k-spaces means Gc
= 0.5 K and Gp = 0.25 K`, as illustrated in the upper half of Fig.
2B, higher resolution from partial echo in read-direction is possible
(lower half).
The
diffusion-weighted ssEPI sequence was tested on a clinical 3T Achieva
scanner (Philips, The Netherlands) on two fetuses (gestational ages
30+1, 34+2) after informed consent was obtained. Parameters included:
FOV = 315mm x 315mm x 77mm; resolution of 3.2mm isotropic; b-values
of b=0, b=100, b=400; TE=115ms, TR=6000ms, no SENSE, halfscan =
0.838.
Singleband (MB1-MP1),
Multiband2 (MB2-MP1), Singleband-Multiplex2 (MB1-MP2), Multiband4
(MB4-MP1), and Multiband2-Multiplex2 (MB2-MP2) versions were acquired
and reconstructed using in-house reconstruction algorithms.
Results and
discussion:
The results for the
singleband, the 2-fold accelerated (m2-s1 & m1-s2) and the 4 fold
accelerated (m2-s2 & m4-s1) acquisitions are shown in Figure 3.
Despite the challenges of fetal imaging - fetal and maternal motion,
as well as maternal fat - it does demonstrate the ability to obtain
combined multiband-multiplex accelerated images of the fetal brain.
Fig. 4 shows a diffusion weighted study (b0,b100,b400) acquired with
the implemented multiplex imaging capacity, reducing the imaging time
by roughly half.
As there was no
penalty on the EPI read-out train due to inherent limitations in
fetal imaging, the only efficiency loss is due to the duration of the
second excitation pulse and the prolonged MB4 refocusing pulse,
otherwise multiplex2 imaging allowed almost double the speed of the
acquisition. Multiplex methods can combine synergistically with other
slice acceleration techniques such as partial Fourier and SENSE.
Further work will include partial echo in read direction as described
above as well as improvements in the reconstruction.
Acknowledgements
The
authors acknowledge funding from the MRC
strategic funds, GSTT BRC and the ERC funded dHCP. References
[1] Reese, JMRI
29:517, 2009
[2] Feinberg, PLOS
ONE 5(12):e15710, 2010
[3] Malik, ISMRM 2015, 2398