Synopsis
To improve the conditioning of GRAPPA enabled in-plane
acceleration by using phase encoding shifts of spatially neighbouring slices.
Parallel imaging offers the possibility to reduce
acquisition time or echo train lengths needed to fully encode a given object. New
k-space trajectories and reconstruction techniques offer the possibility of
large acceleration factors in the slice direction (in the case of SMS) or in either of the two phase
encoding directions in volumetric imaging. While 2D and 3D
reconstructions can be seen on a common framework, it is not straightforward to, in conventional multi-slice
imaging, have more than 3-4 fold inplane acceleration.TARGET AUDIENCE:
Researchers interested in image
acceleration
Motivation
New k-space trajectories and reconstruction techniques offer the
possibility of large acceleration factors in the slice direction (in the case
of SMS) [1,2] or in either of the two phase
encoding directions in volumetric imaging [3,4]. While 2D and 3D
reconstructions can be seen on a common framework [5], it is not straightforward to, in conventional multi-slice
imaging, have more than 3-4 fold inplane acceleration.
THEORY
In standard 2D Grappa reconstruction of an Ry
accelerated acquisition the non-sampled signal at the k-space coordinate $$$(k_x,k_y+m\delta_{k_y})$$$
of coil i is given by:
$$ S_i(k_x,k_y+m\delta_{k_y},z)
= \sum_{coils}\sum_{\delta_x} \sum_{\delta_y} w_{m,i,z}(coils,\delta_x,\delta_y)
S(k_x+\delta_x\delta_{k_x},k_y+\delta_yR_y\delta_{k_y},z)$$
Where m=1,…,Ry-1, $$$\delta_{kx},\delta_{ky}
$$$ the k-space steps, the range of $$$\delta_x,\delta_y $$$ defines the GRAPPA
kernel size, and the coefficients $$$w$$$ are the GRAPPA weights.
In this manuscript
we propose to extend the grappa kernel to a 3rd dimension in the
hybrid space, $$$(k_x,k_y,z)$$$
$$ S_i(k_x,k_y+m\delta_{k_y},z)=\sum_{coils}\sum_{\delta_x}\sum_{\delta_y}\sum_{\delta_z}w_{m,i,
z}(coils,\delta_x,\delta_y,\delta_z)S(k_x+\delta_x\delta_{k_x},k_y+\delta_yR_y\delta_{k_y},z+\delta_z
) $$
For the sake of completeness
we also explored the possibility of using the same kernels as in figure 1 but applying
it in the $$$(x,k_y,z)$$$.
To make optimum use of the extra dimension, its
information should be as independent from that in the current plane. For this
effect, we propose different shifts of the acquired readout lines in phase
encoding direction are used (see Fig. 1).
METHODS
One subject was scanned, after giving
informed consent, on a 3T scanner
(Magnetom Prisma, Siemens Healthcare, Germany) using a 32 channel head coil.
One 2D-TSE
sequence with the following parameters was acquired: TR/TE=3000/100ms,
FOV=220x220mm, 0.35x0.35mm in plane resolution, slice=3.9mm, 20 slices,
tacq=3min34s. Standard additional reference data volume coil images were
acquired
Raw data were
compressed in the coil dimension to 12 channels using PCA and were subsequently
decimated to simulate different resolutions, acceleration factors and number of
reference lines. This was then used to compare the performance of 2Dk
xk
y
GRAPPA (Eq.1) vs 3Dk
xk
yz GRAPPA (Eq.2). The kernel size
was 3x3 and 3x3x3 for the 2D and 3D method respectively. On the z direction,
only the points from the same kx plane as the target points were used as source
points in order to down-weight the information of the neighboring slices (See
Fig. 1).
Experiment 1:
g-factor maps were calculated using pseudo replica (100 repetitions) on a
dataset decimated to an inplane matrix size of 160x160 (64x64 ACS lines were
used). Acceleration factors were varied from Ry=3,4,6,8, and PEshift factors
varied from 0 to Ry/2 (the corresponding sampling patterns were
applied to th fully sampled data).
Experiment 2:
Coil sensitivities were computed using the scanner volume coil. Synthetic
signal was added to the acquired k-space data. The synthetic data consisted of
4 rectangles positioned in one single slice with a maximum amplitude of ~10% of
the local signal (see top panel of Fig. 4) and a predefined timecourse. The
data were decimated using different sampling strategies (Ry 3, 4, 6, 8 and
different PE shifts). Once reconstructed a GLM was applied. .
RESULTS
Figure 2 shows examples of g-factor maps obtained for
equivalent acceleration factors, using 2D or 3D GRAPPA and the implications of
combining 3DGRAPPA with PE shifts. It is visible that the 3D GRAPPA does not
provide any significant advantage (2nd column) if not combined with
PE shifts (3rd and 4th column). While the benefits are minimal
for Ry=3-4 , they increase significantly for 6 and 8 (Fig.3) with various fine resolution and
contrast being preserved in the regions of greater g-noise amplification.
Figure 4 shows that some of the improvements seen in Fig. 2 and 3 were not translatable
into reduced aliasing and came at a price of a small degree of smoothing in the
z direction and much reduced detectability for 3Dxkyz GRAPPA. ForRy=8 the amount of power on successive slices was 5 and 20%
for the 3Dk_xkyz and 3Dxkyz GRAPPA respectively, while the power aliased was of 5, 7
and 16% for 2Dkxky, 3Dkxkyz and 3Dxkyz.
CONCLUSIONS
The presented 3Dk
xk
yz GRAPPA provides a new mean to accelerate imaging or increase in plane resolution in multi-slice imaging using sequences such as TSE. Because the current formulation is done in a hybrid space it is not straight forward to visualise the prior knowledge/ regularization that is being imposed on the data that is effectively reducing temporal instability as assessed by the g-factor and visual image assessment. Yet, the method does introduce a certain degree of smoothing in the adjacent slice on the z-direction, see Fig. 4, this is relatively benign and limited to the adjacent slices.
Acknowledgements
No acknowledgement found.References
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