Zijing Dong1, Fuyixue Wang1, Xiaodong Ma1, Erpeng Dai1, Zhe Zhang1, and Hua Guo1
1Center for Biomedical Imaging Research, Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China, People's Republic of
Synopsis
A
novel compression method, shot-coil compression, is developed and implemented to a k-space
reconstruction method SYMPHONY for computation acceleration. By this technique,
high resolution multishot diffusion images can be reconstructed with much less
reconstruction time. The basic idea of the proposed method is to remove the
redundant multi-coil and multi-shot data while reserving most useful
information. Simulation and in-vivo experiment were designed and the results
validated the effectiveness of the shot-coil compression method. Target Audience
Researchers and clinicians interested in high resolution diffusion
imaging.
Purpose
For
high resolution DWI, multishot EPI with fewer distortions is a preferred option against
single-shot EPI. However, there are motion-induced shot-to-shot phase variations
due to diffusion sensitization gradients. SYMPHONY
1 and realigned GRAPPA
2 are k-space reconstruction methods for navigated multishot
DWI, which can obtain high-quality diffusion images by integrating information
of all shots and coils. Nevertheless,
SYMPHONY suffers a relatively long computation time, especially when large
number of shots or coil arrays are applied. In this work, we proposed a
shot-coil compression method for SYMPHONY to reduce its reconstruction time without
sacrificing image quality.
Methods
For
large coil arrays, the computation time of parallel imaging methods becomes
longer due to the large datasets. To overcome the computation burden, coil
compression techniques have been developed which can
remove the redundancy in highly correlated multi-coil data. For multishot diffusion
imaging, conventional
coil compression methods that compress data only in coil dimension still result
in relatively long reconstruction time due to a large number of shots. Since
there are correlations between the data of different shots, we performed data
compression along both shot and coil dimensions as an extension of geometric-decomposition
coil compression (GCC) 3 method for multishot diffusion imaging. As
shown in Fig. 1, the proposed method is
divided into three steps,
1. Shift the k-space data of different shots
to the same sampling pattern. The same operation is then performed to the
corresponding 2D navigator of each shot.
2. Reshape the data to combine the coil and
shot dimensions, then we get a new encoding dimension of
$$$N_{c}\times N_{s}$$$, where
$$$N_{c}$$$ is the number of coils,
$$$N_{s}$$$ is the number of shots. 2D navigator data are used to solve the following minimization problem and obtain the compression matrix $$$A$$$ 3.
$$minimize(A_{x}) \; \sum_{x,k_{y}}\parallel (A_{x}^HA_{x}-I)d_{x}(k_{y}) \parallel$$
$$subject \, to \; A_{x}A_{x}^H=I$$
Here, $$$A_{x}$$$
is
the compression matrix of the encoding dimension ($$$N_{c}\times N_{s}$$$) at spatial location
$$$x$$$
and $$$d_{x}(k_{y})$$$ is the k-space data from all dimensions at spatial
location $$$x$$$ and k-space coordinate $$$k_{y}$$$
.
3. Compress
the aligned shot-coil encoding dimension using the compression matrix $$$A$$$.
After compression, the data size is largely reduced and SYMPHONY 1 is
used to reconstruct the diffusion images.
A
simulation was designed to compare the shot-coil compression method with the conventional GCC method. A 32-channel non-diffusion weighted 8-shot dual
spin-echo EPI image was used as a reference. Spatially random phases (third-order) were added to 8-shot data respectively, to simulate the motion-induced phase variations in diffusion
weighted images. The matrix size of the data was 240×232. 240×16 ACS data in the
center of k-space were used to calculate the compression matrix. Compression rate
is defined as the ratio of original and compressed encoding dimensions. The
proposed method was compared with the conventional GCC method at various
compression rates. Single kernel GRAPPA SYMPHONY was used to reconstruct the
simulated data.
In-vivo brain DTI data was also acquired to validate the feasibility of the proposed method. The multishot diffusion tensor images were acquired from a
healthy volunteer on a Philips 3T scanner (Philips Healthcare, Best, The
Netherlands) with the following parameters: number of shot=8, FOV=240×240 mm2, slice thickness=4 mm, TR/TE=2500/77 ms,
in-plane image resolution=1×1 mm2, the number of diffusion
directions=12 with b value=800 s/mm2, navigator size=240×25, Number of Signals Averaged (NSA)=2.
Results
Fig.
2 shows the nRMSEs of the proposed method and the conventional GCC at different
compression rates in the simulation. When the compression rate is higher than
10, the shot-coil compression is much better than the conventional coil
compression. The reconstruction time of SYMPHONY without compression is 8.02s
for a single image, and it is significantly reduced to 0.29s when the
compression rate of the proposed method is 16. Fig. 3 shows the reconstructed
images by SYMPHONY with and without the two compression methods, and the corresponding
error maps (×10) with a compression rate of 16. The nRMSE of shot-coil
compression method is lower than that of conventional GCC (3.32% versus 5.16%).
In-vivo brain results are shown in Fig. 4. The high resolution FA maps reconstructed
by the proposed method are close to those by SYMPHONY without
compression.
Discussion and Conclusion
The simulation and the in-vivo experiment
validated the ability of the shot-coil compression method to remarkably improve
the computation efficiency of SYMPHONY without obvious image degradation. The proposed
method can achieve about 20-fold acceleration in our experiments. Therefore, shot-coil
compression is an effective computation acceleration method for high resolution
multishot diffusion imaging.
Acknowledgements
Grant sponsor: This work
was supported by National Natural Science Foundation of China (61271132, 61571258) and
Beijing Natural Science Foundation (7142091).References
1. Xiaodong M, Zhe Z, et al. High
Resolution Spine Diffusion Imaging using 2D-navigated Interleaved EPI with Shot
Encoded Parallel-imaging Technique (SEPARATE). In Proceedings of the 23th
Annual Meeting of ISMRM, Montreal, Canada, 2015. p. 2799.
2. Liu W, Zhao X, Ma Y, et al. DWI using
navigated interleaved multishot EPI with realigned GRAPPA reconstruction.
Magnetic Resonance in Medicine, 2015.
3. Zhang T, Pauly J M, Vasanawala S S, et al. Coil compression
for accelerated imaging with Cartesian sampling. Magnetic Resonance in
Medicine, 2013, 69(2): 571-582.