Dan Ma1, Jesse Hamilton2, Yun Jiang2, Nicole Seiberlich2, and Mark Griswold1
1Radiology, Case Western Reserve University, Cleveland, OH, United States, 2Biomedical Engineering, Case Western Reserve University, Cleveland, OH, United States
Synopsis
The
purpose of this study is to accelerate the acquisition time of 3D MRF scans. A
simple acquisition scheme was applied to allow a total factor of 144
acceleration as compared to the Nyquist rate, such that 3D T1, T2 and proton
density maps can be acquired from a whole brain scan at clinical resolution in
2.6 minutes.Purpose
The goal
of this study is to accelerate the acquisition time of 3D magnetic resonance
fingerprinting (MRF)[1,2]. MRF is an acquisition and processing framework that utilizes
pseudorandomized acquisition scheme to enable simultaneous quantification of
multiple tissue parameters, such as T1 and T2. This study implemented a simple
accelerated acquisition scheme to allow a total factor of 144 acceleration as
compared to the Nyquist rate, such that 3D T1, T2 and proton density (M0) maps
can be acquired from a whole brain scan at clinical resolution in 2.6 minutes.
Methods
3D slab selective MRF with FISP readout [3] was
implemented using a 3D slab-selective RF pulse with an optimized excitation
profile. Flip angle and TR patterns for each partition were the same as [1].
In-plane acceleration was achieved by using a single spiral arm from a variable
density spiral trajectory[3] in each TR. To improve spatial incoherence, a 7.8⁰
rotation of the trajectory was applied from one TR to the next. This yields an
in-plane acceleration factor of 48. Through-partition acceleration was achieved
by uniformly undersampling the partitions in an interleaved fashion by a factor
of 3. In this way the sampling density of each partition, as well as the
sampling density of each trajectory were the same after the entire acquisition.
Further acceleration came from reducing the waiting time between neighboring
partitions. Although traditional relaxometry methods require spins to be fully
relaxed before sampling each partition, MRF can account for partial relaxation
of the spins by simulating the known waiting time between neighboring
partitions in the dictionary. Before image reconstruction, an SVD method [4]
was applied in k-space, such that instead of reconstructing thousands of 3D
images, only 15 3D volumes were reconstructed. This allowed for shortening of
the reconstruction and pattern recognition time.
Acquisition
3D MRF were applied in both phantom and in vivo
studies, with a FOV of 300x300x48 mm3 and a matrix size of
256x256x16 for the phantom study, and FOV of 300x300x120 mm3 and a
matrix size of 256x256x24 for in vivo study. For each partition, 1500
time-points were acquired. A 3-second waiting time was added in between
neighboring partitions in the in vivo study to allow for relaxation and to
improve SNR. The total acquisition time is 2.6 minutes for a 3D brain scan.
Results
Figure 1 shows the results from 10 cylindrical
phantoms with different T1 and T2 combinations. By using a 3D pulse, the excitation
profile is relative flat in the central 10 partitions, which provides
consistent T1 and T2 values across these partitions. Figures 2 and 3 display the
T1 and T2 maps from different partitions of an in vivo study, in transversal
and coronal views, respectively.
Discussion
This study showed a fast acquisition scheme for
a fully quantitative 3D MRF scan in a 2.6 minute acquisition time demonstrating
T1, T2 and M0 maps with 1.1x1.1x5 mm3 resolution. Further
improvement of image resolution and acquisition time is particularly
interesting, as no parallel imaging or compressed sensing methods have been
used.
Acknowledgements
The
authors would like to acknowledge funding from Siemens Healthcare and NIH
grants NIH 1R01EB016728-01A1 and NIH 5R01EB017219-02References
1. Ma D. ,Gulani V, Seiberlich, N, et al. Magnetic resonance fingerprinting. Nature (2013) 187-192
2. Ma D., Pierre E., Jiang Y., et al, Three-Dimensional MR Fingerprinting (MRF) and MRF-Music AcquisitionsISMRM (2015) , 3390
3. Jiang Y., Ma D., Seiberlich N., et al, MR Fingerprinting Using Fast Imaging with Steady State Precession (FISP) with Spiral Readout. MRM (2014)
4. McGivney D., Pierre E., Ma D. et al, SVD Compression for Magnetic Resonance Fingerprinting in the Time Domain. IEEE TMI. 2014. 10.1109