Jakob Assländer1, Steffen Glaser2, and Jürgen Hennig1
1Dept. of Radiology - Medical Physics, University Medical Center Freiburg, Freiburg, Germany, 2Dept. of Chemistry, Technische Universität München, Munich, Germany
Synopsis
This
paper proposes an inversion-recovery spin-echo SNAPSHOT-FLASH
sequence for quantifying proton-density and T1 of the lung. It is shown
that T1 is reduced compared to the standard gradient-echo
sequence. Similar results have been previously reported for UTE sequences. In combination with an iterative algorithm that is similar to
MR-fingerprinting reconstructions, the feasibility of acquiring
quantitative maps of the entire lung with a resolution of 5 mm x 5 mm x 10 mm within 5.5 s is demonstrated.Introduction
It has been shown repeatedly that breathing oxygen shortens the
$$$T_1$$$ relaxation time in ventilated regions of the
lung$$$^\text{1}$$$. The most widespread methods to quantify
$$$T_1$$$ in the lung is the inversion-recovery SNAPSHOT FLASH
sequence$$$^\text{2}$$$. However, this method is gradient-echo based
and therefore suffers from signal attenuation due to air tissue
interfaces. Furthermore, an echo time (TE) dependency of $$$T_1$$$
has been demonstrated using an ultra-short TE
sequence$$$^\text{3}$$$: Avoiding $$$T_2'$$$-decay, extra-vascular
components contribute to the signal, influencing the average
$$$T_1$$$, promising additional diagnostic
information$$$^\text{3}$$$. Since UTE-sequences are time intensive,
we propose an inversion-recovery spin echo SNAPSHOP FLASH sequence,
employing self-refocusing excitation pulses in the regime of weak
dephasing, which allow an echo time - measured from the
end of the RF-pulse - that exceeds the pulse duration$$$^\text{4}$$$. It is shown
that quantitative $$$T_1$$$ and proton density (PD) maps of the
entire lung can be acquired within $$$5.5~s$$$. The highly undersampled
data is addressed in an iterative reconstruction.
Methods
Data
were acquired in a healthy volunteer during a breath-hold at full
expiration. A 3T PRISMA scanner (Siemens, Erlangen, Germany) was used
equipped with the manufacturer's spine- and body-array of which 30
channels were used. All experiments were performed with the subject
breathing room air and were repeated under the consumption of oxygen. An inversion-recovery
SNAPSHOT-FLASH sequence was modified to use a spin echo generating
excitation pulse$$$^\text{4}$$$. The employed pulse has a duration of
$$$150~\mu\text{s}$$$ and an echo time of $$$630~\mu\text{s}$$$
measured from the end of the RF-pulse. The pulse shape is depicted in
Fig.1 along with the corresponding phase evolution of the excited
spin isochromats. A flip angle of $$$1.2^\circ$$$ was used. For
comparison, a $$$100~\mu\text{s}$$$ rectangular pulse was used.
The
nominal spatial resolution was
$$$5~\text{mm}\times5~\text{mm}\times10~\text{mm}$$$ with a
$$$FOV=640~\text{mm}\times640~\text{mm}\times240~\text{mm}$$$ in
coronal orientation. With $$$TR=1.6~\text{ms}$$$ the total
acquisition time was $$$5.5~\text{s}$$$.
Spatial
encoding was performed with a stack-of-stars trajectory: While
sweeping through $$$k_z$$$, an increment of
$$$\alpha_\text{gold}\cdot{N_{shots}}/N_z$$$ was used, where
$$$\alpha_\text{gold}\approx111^\circ$$$ is the golden angle,
$$$N_{shots}$$$ is the total number of excitations and $$$N_z$$$
is the matrix size in z-direction. After acquiring one spoke for each
$$$k_z$$$, the whole trajectory is repeated rotated by
$$$\alpha_\text{gold}$$$, ensuring good k-space coverage both within
each partition as well as in comparison to the neighboring
partitions.
In
total 3456 spokes were acquired, which corresponds approximately to
72% of Nyquist sampling. With this data, $$$T=144$$$ images were
reconstructed, using one spoke per $$$k_z$$$-partition and minimizing
the following cost function:
$$\tilde{x}=\arg\min_{x~\in~\mathbb{C}^{N
\times
T}}\sum_{t=0}^{T-1}\left|\left|\mathbf{E}_{t,:,:}\cdot{x_{:,t}}–S_{:,t}\right|\right|_2^2+\lambda^2\sum_{n=0}^{N-1}\left|\left|x_{n,:}-\mathbf{P}_{\mathcal{A}}(x_{n,:})\right|\right|_2^2\;.$$The
search variable $$$x$$$ contains all $$$N$$$ voxels of all $$$T$$$
time-frames. The first summand is the data consistency term with the
forward operator $$$\mathbf{E}$$$ which incorporates a non-uniform
FFT and ESPIRiT$$$^\text{5}$$$ coil sensitivities. The second term
compares the time series of each voxel with its projection
$$$\mathbf{P}$$$ onto the manifold
$$$\mathcal{A}=\{\exp(i\phi)(a-b\exp(-t/c))\;|\;\phi,a,b,c\in\mathbb{R}\}$$$.
Because this algorithm approaches the Bloch response recovery via
iterated projection$$$^\text{6}$$$ algorithm (BLIP) when setting the
regularization parameter to $$$\lambda\rightarrow\infty$$$ we refer
to it as generalized BLIP (gBLIP). Given this projection,
$$$T_1=c(b/a-1)$$$ reveals the desired relaxation time for
Look-Locker sequences. For computational efficiency, the projection
was performed with a precomputed dictionary.
Results
Fig.2
shows one slice of the resulting PD-maps. One can observe an increase
of the parenchyma signal when employing the proposed spin echo pulse
(b) compared to the traditional gradient-echo IR-SNAPSHOT-FLASH (a).
In a region of interest in the upper left lung, the signal increase
was measured to be 38%. Furthermore, one can observe an increase of
the fat signal, which is a side effect resulting from fat-water-shift
in combination with the excitation profile of the
RF-pulse$$$^\text{4}$$$. Fig.3 shows a slice of the $$$T_1$$$-maps
under the consumption of oxygen. The spin echo image shows a similar
reduction of the relaxation time compared to
UTE-sequences$$$^\text{3}$$$. Smoothed maps of the
$$$\Delta{T_1}=T_1^{\text{air}}-T_1^{\text{O}_2}$$$ are shown in
Fig.4, overlayed onto PD-maps. $$$\Delta{T_1}$$$ is slightly reduced
when employing the SE-pulses and the structure of $$$\Delta{T_1}$$$
is changed.
Discussion
In
this study, a similar increase of the parenchyma signal has been
observed compared to previous studies$$$^\text{4}$$$. Furthermore, the reduction
of $$$T_1$$$ due to signal contributions of the extra-vascular
components is strongly comparable to the reduction observed with
UTE-sequences$$$^\text{3}$$$. Thus, our experiment supports the
hypothesis of $$$^\text{3}$$$ that the change in $$$T_1$$$ results
from extra-vascular signal contributions with short $$$T_1$$$ that are less visible in gradient-echo images, since their neighborhood to air results in a fast $$$T_2'$$$-relaxation.
Overall,
the results demonstrate the feasibility of the proposed
IR-SE-SNAPSHOT-FLASH sequence for quantitative lung imaging with additional diagnostic information. The changes in the
$$$\Delta{T_1}$$$-maps are not yet fully understood and will be
subject of future investigations.
Acknowledgements
The authors would like to thank Wilfried Reichardt for the medical supervision of the experiments.References
[1]
Edelman RR, Hatabu H, Tadamura E, Li W, Prasad PV. Noninvasive
assessment of regional ventilation in the human lung using
oxygen-enhanced magnetic resonance imaging. Nat Med 1996;2: 1196–1236
[2]
Jakob PM, Wang T, Schultz G, Hebestreit H, Hebestreit A, Hahn D.
Assessment of human pulmonary function using oxygen- enhanced T1
imaging in patients with cystic fibrosis. Magn Reson Med
2004;51:1009–1016
[3]
Triphan, S. M. F. F., Jobst, B. J., Breuer, F. A., Wielpütz, M. O.,
Kauczor, H.-U., Biederer, J., & Jakob, P. M. (2015). Echo time
dependence of observed T 1 in the human lung. Journal of Magnetic
Resonance Imaging. doi:10.1002/jmri.24840
[4]
Assländer, J., Glaser, S. J., & Hennig, J. (2015). Spin echoes
in the regime of weak dephasing. Magnetic Resonance in Medicine,
(epub ahead of print). doi:10.1002/mrm.25579
[5]
Uecker, M., Lai, P., Murphy, M. J., Virtue, P., Elad, M., Pauly, J.
M., & Lustig, M. (2014). ESPIRiT - An eigenvalue approach to
autocalibrating parallel MRI: Where SENSE meets GRAPPA. Magnetic
Resonance in Medicine, 71(3), 990–1001. doi:10.1002/mrm.24751
[6]
Davies, M., Puy, G., Vandergheynst, P., & Wiaux, Y. (2014). A
Compressed Sensing Framework for Magnetic Resonance Fingerprinting.
SIAM Journal on Imaging Sciences, 7(4), 27. doi:10.1137/130947246