Synopsis
This
paper proposes an inversion-recovery spin-echo SNAPSHOT-FLASH
sequence for quantifying proton-density and T1 of the lung. It is shown
that T1 is reduced compared to the standard gradient-echo
sequence. Similar results have been previously reported for UTE sequences. In combination with an iterative algorithm that is similar to
MR-fingerprinting reconstructions, the feasibility of acquiring
quantitative maps of the entire lung with a resolution of 5 mm x 5 mm x 10 mm within 5.5 s is demonstrated.Introduction
It has been shown repeatedly that breathing oxygen shortens the
T1 relaxation time in ventilated regions of the
lung
1. The most widespread methods to quantify
T1 in the lung is the inversion-recovery SNAPSHOT FLASH
sequence
2. However, this method is gradient-echo based
and therefore suffers from signal attenuation due to air tissue
interfaces. Furthermore, an echo time (TE) dependency of
T1
has been demonstrated using an ultra-short TE
sequence
3: Avoiding
T′2-decay, extra-vascular
components contribute to the signal, influencing the average
T1, promising additional diagnostic
information
3. Since UTE-sequences are time intensive,
we propose an inversion-recovery spin echo SNAPSHOP FLASH sequence,
employing self-refocusing excitation pulses in the regime of weak
dephasing, which allow an echo time - measured from the
end of the RF-pulse - that exceeds the pulse duration
4. It is shown
that quantitative
T1 and proton density (PD) maps of the
entire lung can be acquired within
5.5 s. The highly undersampled
data is addressed in an iterative reconstruction.
Methods
Data
were acquired in a healthy volunteer during a breath-hold at full
expiration. A 3T PRISMA scanner (Siemens, Erlangen, Germany) was used
equipped with the manufacturer's spine- and body-array of which 30
channels were used. All experiments were performed with the subject
breathing room air and were repeated under the consumption of oxygen. An inversion-recovery
SNAPSHOT-FLASH sequence was modified to use a spin echo generating
excitation pulse4. The employed pulse has a duration of
150 μs and an echo time of 630 μs
measured from the end of the RF-pulse. The pulse shape is depicted in
Fig.1 along with the corresponding phase evolution of the excited
spin isochromats. A flip angle of 1.2∘ was used. For
comparison, a 100 μs rectangular pulse was used.
The
nominal spatial resolution was
5 mm×5 mm×10 mm with a
FOV=640 mm×640 mm×240 mm in
coronal orientation. With TR=1.6 ms the total
acquisition time was 5.5 s.
Spatial
encoding was performed with a stack-of-stars trajectory: While
sweeping through kz, an increment of
αgold⋅Nshots/Nz was used, where
αgold≈111∘ is the golden angle,
Nshots is the total number of excitations and Nz
is the matrix size in z-direction. After acquiring one spoke for each
kz, the whole trajectory is repeated rotated by
αgold, ensuring good k-space coverage both within
each partition as well as in comparison to the neighboring
partitions.
In
total 3456 spokes were acquired, which corresponds approximately to
72% of Nyquist sampling. With this data, T=144 images were
reconstructed, using one spoke per kz-partition and minimizing
the following cost function:
˜x=argminThe
search variable x contains all N voxels of all T
time-frames. The first summand is the data consistency term with the
forward operator \mathbf{E} which incorporates a non-uniform
FFT and ESPIRiT^\text{5} coil sensitivities. The second term
compares the time series of each voxel with its projection
\mathbf{P} onto the manifold
\mathcal{A}=\{\exp(i\phi)(a-b\exp(-t/c))\;|\;\phi,a,b,c\in\mathbb{R}\}.
Because this algorithm approaches the Bloch response recovery via
iterated projection^\text{6} algorithm (BLIP) when setting the
regularization parameter to \lambda\rightarrow\infty we refer
to it as generalized BLIP (gBLIP). Given this projection,
T_1=c(b/a-1) reveals the desired relaxation time for
Look-Locker sequences. For computational efficiency, the projection
was performed with a precomputed dictionary.
Results
Fig.2
shows one slice of the resulting PD-maps. One can observe an increase
of the parenchyma signal when employing the proposed spin echo pulse
(b) compared to the traditional gradient-echo IR-SNAPSHOT-FLASH (a).
In a region of interest in the upper left lung, the signal increase
was measured to be 38%. Furthermore, one can observe an increase of
the fat signal, which is a side effect resulting from fat-water-shift
in combination with the excitation profile of the
RF-pulse
^\text{4}. Fig.3 shows a slice of the
T_1-maps
under the consumption of oxygen. The spin echo image shows a similar
reduction of the relaxation time compared to
UTE-sequences
^\text{3}. Smoothed maps of the
\Delta{T_1}=T_1^{\text{air}}-T_1^{\text{O}_2} are shown in
Fig.4, overlayed onto PD-maps.
\Delta{T_1} is slightly reduced
when employing the SE-pulses and the structure of
\Delta{T_1}
is changed.
Discussion
In
this study, a similar increase of the parenchyma signal has been
observed compared to previous studies^\text{4}. Furthermore, the reduction
of T_1 due to signal contributions of the extra-vascular
components is strongly comparable to the reduction observed with
UTE-sequences^\text{3}. Thus, our experiment supports the
hypothesis of ^\text{3} that the change in T_1 results
from extra-vascular signal contributions with short T_1 that are less visible in gradient-echo images, since their neighborhood to air results in a fast T_2'-relaxation.
Overall,
the results demonstrate the feasibility of the proposed
IR-SE-SNAPSHOT-FLASH sequence for quantitative lung imaging with additional diagnostic information. The changes in the
\Delta{T_1}-maps are not yet fully understood and will be
subject of future investigations.
Acknowledgements
The authors would like to thank Wilfried Reichardt for the medical supervision of the experiments.References
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