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Application of Spin Echoes in the Regime of Weak Dephasing to Oxygen Enhanced T1-Quantification in the Lung
Jakob Assländer1, Steffen Glaser2, and Jürgen Hennig1

1Dept. of Radiology - Medical Physics, University Medical Center Freiburg, Freiburg, Germany, 2Dept. of Chemistry, Technische Universität München, Munich, Germany

Synopsis

This paper proposes an inversion-recovery spin-echo SNAPSHOT-FLASH sequence for quantifying proton-density and T1 of the lung. It is shown that T1 is reduced compared to the standard gradient-echo sequence. Similar results have been previously reported for UTE sequences. In combination with an iterative algorithm that is similar to MR-fingerprinting reconstructions, the feasibility of acquiring quantitative maps of the entire lung with a resolution of 5 mm x 5 mm x 10 mm within 5.5 s is demonstrated.

Introduction

It has been shown repeatedly that breathing oxygen shortens the T1 relaxation time in ventilated regions of the lung1. The most widespread methods to quantify T1 in the lung is the inversion-recovery SNAPSHOT FLASH sequence2. However, this method is gradient-echo based and therefore suffers from signal attenuation due to air tissue interfaces. Furthermore, an echo time (TE) dependency of T1 has been demonstrated using an ultra-short TE sequence3: Avoiding T2-decay, extra-vascular components contribute to the signal, influencing the average T1, promising additional diagnostic information3. Since UTE-sequences are time intensive, we propose an inversion-recovery spin echo SNAPSHOP FLASH sequence, employing self-refocusing excitation pulses in the regime of weak dephasing, which allow an echo time - measured from the end of the RF-pulse - that exceeds the pulse duration4. It is shown that quantitative T1 and proton density (PD) maps of the entire lung can be acquired within 5.5 s. The highly undersampled data is addressed in an iterative reconstruction.

Methods

Data were acquired in a healthy volunteer during a breath-hold at full expiration. A 3T PRISMA scanner (Siemens, Erlangen, Germany) was used equipped with the manufacturer's spine- and body-array of which 30 channels were used. All experiments were performed with the subject breathing room air and were repeated under the consumption of oxygen. An inversion-recovery SNAPSHOT-FLASH sequence was modified to use a spin echo generating excitation pulse4. The employed pulse has a duration of 150 μs and an echo time of 630 μs measured from the end of the RF-pulse. The pulse shape is depicted in Fig.1 along with the corresponding phase evolution of the excited spin isochromats. A flip angle of 1.2 was used. For comparison, a 100 μs rectangular pulse was used.

The nominal spatial resolution was 5 mm×5 mm×10 mm with a FOV=640 mm×640 mm×240 mm in coronal orientation. With TR=1.6 ms the total acquisition time was 5.5 s. Spatial encoding was performed with a stack-of-stars trajectory: While sweeping through kz, an increment of αgoldNshots/Nz was used, where αgold111 is the golden angle, Nshots is the total number of excitations and Nz is the matrix size in z-direction. After acquiring one spoke for each kz, the whole trajectory is repeated rotated by αgold, ensuring good k-space coverage both within each partition as well as in comparison to the neighboring partitions.

In total 3456 spokes were acquired, which corresponds approximately to 72% of Nyquist sampling. With this data, T=144 images were reconstructed, using one spoke per kz-partition and minimizing the following cost function: ˜x=argminThe search variable x contains all N voxels of all T time-frames. The first summand is the data consistency term with the forward operator \mathbf{E} which incorporates a non-uniform FFT and ESPIRiT^\text{5} coil sensitivities. The second term compares the time series of each voxel with its projection \mathbf{P} onto the manifold \mathcal{A}=\{\exp(i\phi)(a-b\exp(-t/c))\;|\;\phi,a,b,c\in\mathbb{R}\}. Because this algorithm approaches the Bloch response recovery via iterated projection^\text{6} algorithm (BLIP) when setting the regularization parameter to \lambda\rightarrow\infty we refer to it as generalized BLIP (gBLIP). Given this projection, T_1=c(b/a-1) reveals the desired relaxation time for Look-Locker sequences. For computational efficiency, the projection was performed with a precomputed dictionary.

Results

Fig.2 shows one slice of the resulting PD-maps. One can observe an increase of the parenchyma signal when employing the proposed spin echo pulse (b) compared to the traditional gradient-echo IR-SNAPSHOT-FLASH (a). In a region of interest in the upper left lung, the signal increase was measured to be 38%. Furthermore, one can observe an increase of the fat signal, which is a side effect resulting from fat-water-shift in combination with the excitation profile of the RF-pulse^\text{4}. Fig.3 shows a slice of the T_1-maps under the consumption of oxygen. The spin echo image shows a similar reduction of the relaxation time compared to UTE-sequences^\text{3}. Smoothed maps of the \Delta{T_1}=T_1^{\text{air}}-T_1^{\text{O}_2} are shown in Fig.4, overlayed onto PD-maps. \Delta{T_1} is slightly reduced when employing the SE-pulses and the structure of \Delta{T_1} is changed.

Discussion

In this study, a similar increase of the parenchyma signal has been observed compared to previous studies^\text{4}. Furthermore, the reduction of T_1 due to signal contributions of the extra-vascular components is strongly comparable to the reduction observed with UTE-sequences^\text{3}. Thus, our experiment supports the hypothesis of ^\text{3} that the change in T_1 results from extra-vascular signal contributions with short T_1 that are less visible in gradient-echo images, since their neighborhood to air results in a fast T_2'-relaxation. Overall, the results demonstrate the feasibility of the proposed IR-SE-SNAPSHOT-FLASH sequence for quantitative lung imaging with additional diagnostic information. The changes in the \Delta{T_1}-maps are not yet fully understood and will be subject of future investigations.

Acknowledgements

The authors would like to thank Wilfried Reichardt for the medical supervision of the experiments.

References

[1] Edelman RR, Hatabu H, Tadamura E, Li W, Prasad PV. Noninvasive assessment of regional ventilation in the human lung using oxygen-enhanced magnetic resonance imaging. Nat Med 1996;2: 1196–1236

[2] Jakob PM, Wang T, Schultz G, Hebestreit H, Hebestreit A, Hahn D. Assessment of human pulmonary function using oxygen- enhanced T1 imaging in patients with cystic fibrosis. Magn Reson Med 2004;51:1009–1016

[3] Triphan, S. M. F. F., Jobst, B. J., Breuer, F. A., Wielpütz, M. O., Kauczor, H.-U., Biederer, J., & Jakob, P. M. (2015). Echo time dependence of observed T 1 in the human lung. Journal of Magnetic Resonance Imaging. doi:10.1002/jmri.24840

[4] Assländer, J., Glaser, S. J., & Hennig, J. (2015). Spin echoes in the regime of weak dephasing. Magnetic Resonance in Medicine, (epub ahead of print). doi:10.1002/mrm.25579

[5] Uecker, M., Lai, P., Murphy, M. J., Virtue, P., Elad, M., Pauly, J. M., & Lustig, M. (2014). ESPIRiT - An eigenvalue approach to autocalibrating parallel MRI: Where SENSE meets GRAPPA. Magnetic Resonance in Medicine, 71(3), 990–1001. doi:10.1002/mrm.24751

[6] Davies, M., Puy, G., Vandergheynst, P., & Wiaux, Y. (2014). A Compressed Sensing Framework for Magnetic Resonance Fingerprinting. SIAM Journal on Imaging Sciences, 7(4), 27. doi:10.1137/130947246

Figures

Figure 1: The pulse shape (a) is depicted along with the phase evolution of the excited spin isochromats (b). The isochromats accumulate a phase dispersion near the equator, which is amplified and inverted by approaching and crossing the z-axis thereafter. This results in a spin-echo formation where the echo time - measured from the end of the pulse - exceeds the duration of the pulse itself.

Figure 2: The proton density of one slice of the acquired 3D volume is depicted. A standard 100 μs rectangular pulse is used in (a) and the proposed self-refocussing pulse in (b). An increase in the parenchyma signal is achieved when employing the proposed RF-pulse (b).

Figure 3: Comparing the T1-maps acquired with the 100 μs rectangular pulse (a) and the proposed self-refocussing pulse (b), one can observe a decrease of T1 in the lung in the SE-case (b). This observation is in good agreement with UTE-experiments3 and is assumed to reflect signal contributions of extra-vascular components, which have a short T1 as well as a short T2'. Latter reduces their visbility in gradient-echo sequences (a). The maps were acquired under the consumption of oxygen.

Figure 4: The difference of T1 when breathing standard room air and oxygen is displayed. The data was acquired with a standard 100 μs rectangular pulse (a) and the proposed self-refocussing pulse (b). ΔT1 is slightly decreased in (b) and the structure is changed as well.



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
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