Rapid T1-Mapping of Mouse Hearts using Real-Time MRI
Tobias Wech1, Nicole Seiberlich2, Andreas Schindele3, Alfio Borzì3, Herbert Köstler1, and Jürgen E. Schneider4

1Department of Diagnostical and Interventional Radiology, University of Würzburg, Würzburg, Germany, 2Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, United States, 3Institute of Mathematics, University of Würzburg, Würzburg, Germany, 4Radcliffe Department of Medicine, University of Oxford, Oxford, United Kingdom

Synopsis

The feasibility of using real-time MRI to determine $$$T_1$$$ relaxation times in mouse hearts was explored. An inversion recovery prepared and highly undersampled radial acquisition was applied and data were reconstructed using a combination of through-time radial GRAPPA and compressed sensing. The ECG in combination with the DC-signal recorded for each projection was used to eliminate cardiac and respiratory motion, which allowed for fitting $$$T_1$$$-values in every voxel. The method was applied to five mice in vivo and the measured $$$T_1$$$-values found for myocardial tissue agreed well with literature. Our work indicates that it is possible to accurately measure $$$T_1$$$ in mice using real-time MRI.

Target audience

Scientists and clinicians interested in fast cardiac MRI in rodents.

Purpose

The $$$T_1$$$ relaxation time of myocardial tissue is an important parameter for the investigation of various cardiac diseases. The $$$T_1$$$ measurement in small animals, however, is challenging. When using an initial inversion of the magnetization, it is usually necessary to acquire data within several repetitions/inversions to adequately cover the relaxation process and to account for cardiac and breathing motion. In [1], a method was presented, which allows determining real time cardiac images in mice at a temporal resolution of ~12 ms, by using highly undersampled radial acquisitions reconstructed by a combination of through-time radial GRAPPA [2] and CS [3]. This technique was applied to an inversion recovery (IR) prepared acquisition in the mouse heart to enable the determination of a 2D $$$T_1$$$-map by using a single inversion only.

Methods

Data were acquired in healthy C57BL/6 mice (n=5) on a horizontal 9.4T MR system comprising a VNMRS DDR2 console (Agilent, Santa Clara, US), a 1000 mT/m gradient system and a four-channel cardiac array (Rapid Biomedical, Germany). A radial IR-Look-Locker FLASH sequence (TE/TR=0.99/1.98ms, FOV=30x30mm, 1mm short-axis slice, matrix size 128x128, flip angle 5°) was applied using a slice selective, adiabatic inversion pulse. The undersampled datasets (six projections per timeframe) were then subjected to the reconstruction algorithm described in [1], while a low-rank plus sparse model [4] was applied in the compressed sensing part instead of the temporal TV operator of the original implementation. This yielded a fully sampled series of images at a temporal resolution of 11.88 ms corresponding to ~10 timeframes per cycle. The ECG, recorded during the measurement, in combination with the DC-signal (i.e. center of k-space) of the series allowed to identify a diastolic timeframe per RR-interval and to exclude frames corrupted by respiratory motion (see Fig. 1). The chosen frames and their timestamps were finally used to perform a 3-parameter fit to the temporal course of every voxel: $$$M(t) = M_0^* - (M_0 + M_0^*) \cdot exp(-t/T_1^*)$$$, with $$$T_1 = T_1^* \cdot [(M_0 + M_0^*)/M_0^* -1]$$$.

Results

Fig. 2a shows the resulting $$$T_1$$$-map in full field-of-view for one mouse. Voxels containing low signal in the real-time images were masked. The image quality was confirmed in the maps obtained for the remaining four mice (Fig. 2b-e). The $$$T_1$$$ values in myocardial tissue agreed well between the different animals and a ROI-analysis within the left ventricle yielded a mean value across all mice of $$$T_1$$$ = 1.12 $$$\pm$$$ 0.15 s which is in accordance with the values found earlier [5].

Discussion & Conclusion

The initial results demonstrate that the proposed technique provides accurate myocardial $$$T_1$$$ maps in mice using a single inversion only. The acquisition time of only ~ 5s per slice would significantly shorten the duration of the measurement and therefore simplify and speed up comprehensive studies of the murine heart. Next steps comprise of the validation of the technique in a larger cohort as well as the investigation of disease models.

Acknowledgements

Grant sponsors: DFG (KO 2938/4-1), BHF (FS/11/50/29038); NIH/NIBIB (R00EB011527, 1RO1HL094557); IZKF (F-254); Support by an Agilent UR Grant.

References

[1] Wech et al., ISMRM #3445 (2015) [2] N. Seiberlich, et al., Magn Reson Med, 65(2):492-505 (2011). [3] A. Beck et al., Siam Journal on Imaging Sciences, 2(1):183-202 (2009) [4] Otazo et al., MRM 73(3):1125-1136 (2015) [5] Schneider et al., JMRI 18:691-701 (2003)

Figures

DC-signal plotted over time (blue). The red lines mark the ECG trigger recorded during the measurement. Each RR-interval is approximately covered by 10 timeframes, while only one diastolic frame was used to fit the $$$T_1^*$$$-values. The yellow shadows mark heart beats which were excluded due to respiratory motion.

$$$T_1$$$-map in short-axis view. a) Mouse #1 in full field of view. b-e) Mice #2-5 in a zoomed depiction.



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
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