Marco Bertleff1, Sebastian Domsch1, Frederik Laun2, Tristan Kuder2, and Lothar Schad1
1Computer Assisted Clinical Medicine, Heidelberg University, Medical Faculty Mannheim, Mannheim, Germany, 2Department of Medical Physics in Radiology, German Cancer Research Center (DKFZ), Heidelberg, Germany
Synopsis
The study of porous microstructures is of high
interest in medical imaging. Diffusion pore imaging (DPI) has recently been
proposed as a means to acquire images of the average cell shape in a
voxel or region of interest.
In this work, we present the feasibility of DPI phantom
measurements on a preclinical 9.4T animal scanner for the first time and preliminarily
compare two different sequence implementations. The shown feasibility on a preclinical system opens the possibility of a
potential in-vivo measurement realization.Target Audience
Researchers interested in imaging of
microstructures in living tissue as well as other porous materials by means of
nuclear magnetic resonance diffusion experiments.
Purpose
The study of porous microstructures is of high
interest in medical imaging. The structure of the observed tissue on the scale
of cell sizes can reveal important information about possible pathologies. While
classical diffusion weighted imaging is only indirectly related to structural
features like the cellularity, diffusion pore imaging (DPI), which builds on a modified
diffusion weighting,
1,2
has recently been proposed as a means to acquire images of the average cell
shape in a voxel or region of interest. In this work, we present the
feasibility of DPI on a preclinical scanner for the first time. Further,
preliminary results are shown for a comparison of two different DPI
implementations as proposed by Laun et al.
1 and Hertel et al.
3Methods
In contrast to the classical pulsed gradient spin echo (PGSE) sequence,
4
which uses two narrow gradient pulses (Fig. 1a), the mentioned DPI technique is
based on a highly asymmetric gradient shape with a long pulse of low amplitude
and a narrow pulse of high amplitude. Due to this change, DPI is able to
preserve the phase information of the scatter-like diffusion process, which
fails in the classical approach. In the following, the implementation using a
single long and a single narrow gradient pulse as proposed by Laun et al.
1 is
labeled method 1 (Fig. 1b) and the implementation as used by Hertel et al.
3 is
labeled method 2 (Fig. 1c). The latter splits up the gradient pulses into
multiple shorter ones and introduces accordingly as many additional refocusing
pulses in between them. Both techniques were implemented on a preclinical 9.4T
animal scanner (Bruker Biospec) with a maximum gradient amplitude of 706 mT/m.
An ensemble of about 1000 water-filled glass capillaries with inner diameter of
20 μm was measured. Effective durations of 200 ms for the long and 8 ms
for the narrow gradient pulse were the same in the two implementations. For
method 2, the long gradient pulse was subdivided into 40 and the narrow one
into two pulses.
Results
Figure 2 shows the real part of the 1D signal
plotted over the applied q-values. A first order Bessel function J
1
was fitted to the data, which is the expected characteristic signal shape for
the cylindrical pore shape, yielding fitted diameters of (20.6 ± 0.4) µm
(method 1, top) and (19.3 ± 1.2) µm
(method 2, bottom). The agreement of the signal with J
1 and the
consequent presence of negative values indicates the achieved phase
preservation. The SNR was approximately 51 for method 1 and 16 for method 2. Figure
3 shows the result of a 2D measurement with method 1 after a
2D-Fourier-transformation into position space and displays the average pore
shape of the phantom. Remarkably, the resolution of this image is of the order
of a few μm.
Discussion and Outlook
Feasibility of DPI on a preclinical animal
scanner was demonstrated for the first time.
Method 1 and 2 were both well suited. We currently deem the reported
difference in SNR values to be a preliminary result, which may change upon
implementation of improved RF-amplitude adjustments. Method 2 results in a
potential SNR increase due to shorter echo times. However, this comes at the
cost of introducing many additional refocusing pulses along with a complex
phase cycling scheme to suppress unwanted coherence paths. Method 1 builds on a
single refocused spin echo sequence with one clear coherence path and the
effect of imperfectly adjusted RF-pulses is minimized. For an in-vivo
application of DPI, various practical issues, such as SNR, and also fundamental
problems, like finding an appropriate way of dealing with extracellular water,
will have to be tackled. However, the shown feasibility of phantom measurements
on a preclinical animal scanner opens the possibility of a potential in-vivo
measurement realization.
Acknowledgements
We thank Dr. Stefan Hertel and Dr. Petrik Galvosas (both from MacDiarmid
Institute for Advanced Materials and Nanotechnology, School of Chemical and
Physical Sciences, Victoria University of Wellington) for sharing their
expertise on the phantom used in this work.References
1. Laun, F.B., et
al., Determination of the defining
boundary in nuclear magnetic resonance diffusion experiments. Physical
review letters, 2011. 107(4): p.
048102.
2. Laun, F.B., et
al., NMR-based diffusion pore imaging.
Physical Review E, 2012. 86(2): p.
021906.
3. Hertel, S., M.
Hunter, and P. Galvosas, Magnetic resonance
pore imaging, a tool for porous media research. Physical Review E, 2013. 87(3): p. 030802.
4. Stejskal,
E. and J. Tanner, Spin diffusion
measurements: spin echoes in the presence of a time-dependent field gradient.
The journal of chemical physics, 1965. 42(3):
p. 288-292.