Sean Foxley1, Saad Jbabdi1, Moises Hernandez Fernandez1, Connor Scott2, Olaf Ansorge2, and Karla Miller1
1FMRIB Centre, University of Oxford, Oxford, United Kingdom, 2Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom
Synopsis
In this
work we compare a single flip angle and dual flip angle approach to overcome B1
inhomogeneities in DW-SSFP data of post mortem human brain at 7T. Both
approaches were designed and optimized to achieve optimal CNR with whole brain
coverage. The single flip angle approach displayed slight improvements in
orientation estimates; however, the dual flip angle approach is being further
investigated as a potential source of microstructural estimates with little to
no cost in orientation.Introduction
Diffusion imaging of post-mortem (PM) human brain
has important applications, including validating diffusion signal models and investigating
anatomy with very high-resolution data
1. Diffusion-weighted steady
state free precession (DW-SSFP) has been demonstrated to be ideally suited for
PM imaging at both 3T
2 and 7T
3. However, at 7T challenges
arise due to B1 inhomogeneity, which causes the true flip angle to vary across
the brain compared to the nominal flip angle. In this work we compare data
acquired with 2N diffusion-weighted directions at a single nominal flip angle against
N directions repeated at two nominal flip angles
4. In both
strategies, the nominal flip angles (or equivalently, transmit voltages) have been
chosen to optimize CNR while achieving maximum whole brain coverage.
Methods
Data were acquired of PM human brains (n=4)
diagnosed with motor neuron disease. PM intervals were under 72 hours. Brains were
submerged in Fomblin for susceptibility matching. DW-SSFP data were
acquired at 0.85mm isotropic on a human 7T Siemens whole body scanner using a
32-channel receive head coil. DTI data were acquired over 120 diffusion
directions with a q-value of 300 mm
-1 (achieving diffusion contrast
equivalent to b
eff ~ 6000 s/mm
2). Different flip angle
strategies can be analyzed with respect to the highly reproducible distribution
of B1 across the brain. If we assume homogeneous B1 transmission, one can
calculate the optimum flip angle as that which maximizes CNR
2. At 7T,
increasing or decreasing the transmit voltage determines the position of this
flip angle within the brain (Figure 1). In the single flip angle strategy, the
transmit voltage was set to position the optimal flip angle midway between the
center of the brain and the cortex. While the center and periphery are both
acquired far from the optimal flip angle, this has the effect of maximizing the
average CNR across the range of B1 inhomogeneities. In the dual flip angle approach, the transmit
voltage is set so optimal flip angles are at the center of the brain and the
periphery for each acquisition, respectively
3. Single flip data were
acquired twice to match total scan time with the dual flip approach. All data
were processed using a modified version of DTIFIT to account for the DW-SSFP
signal model
5. Data were white matter masked before analysis. A
measured B1 map was binned to serve as regions of interest for analysis of
signal behavior in terms of transmit inhomogeneity (Figure 2).
Results
First we
consider the behavior of the three different ranges of voltage settings
separately in terms of dispersion and coherence of the estimated orientation.
Figure 3 shows orientation dispersion and coherence (mean ± standard error
across all brains) vs. B1 for the three anatomically driven transmit voltages (based
on a single set of 120 directions for each voltage). Low voltage produces high
dispersion and low coherence in the cortex and low dispersion and high
coherence in the center; high voltage produces opposite results. The medium
voltage data appear to adopt the best of the other two approaches: comparably
high coherence and low dispersion in the center and the cortex compared with
low and high voltage results, respectively. Moreover, medium voltage results in
the region of the brain between the center and the cortex are improved compared
with either of the other two. If a single voltage is to be used, it is clear
that the medium voltage is preferable.
Figure 4 shows the same plots for data processed
with either 2 averages of the medium voltage or combined low and high voltage
data. Coherence in the single flip data is slightly lower across the brain in
medium voltage data than the dual flip, while dispersions are similar. Orientation
results of the single and dual flip strategies (Figure 5) show that in both
cortex and the center of the brain that while metrics to determine which
approach is optimal, the actual differences are quite subtle.
Conclusion/Discusion
This work presents a comparison of two
acquisition strategies to overcome B1 inhomogeneities at 7T. Analysis of the
three different transmit voltages demonstrates that we can exploit B1 inhomogeneity
to tailor the flip angles, thereby allowing for targeting regions of the brain
between the center and the cortex. Results indicate that the latter, simpler
approach is if anything slightly better in terms of orientation estimates.
However, separate work has begun to appreciate the potential to fit more
sophisticated signal models (e.g. biexponential decay or restriction effects)
to DW-SSFP with multiple flip angles, potentially allowing us to achieve
microstructural estimates at little to no cost to orientation estimates.
Acknowledgements
MRC and Wellcome for funding
Thomas Willis Brain Collection for samples
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