Rashmi Reddy1, Imam Shaik1, Nithin N Vajuvalli1, Dharmendra Kumar K C1, and Sairam Geethanath1
1Dayananda Sagar Institutions, Bangalore, India
Synopsis
The
proposed method combines Compressed Sensing (CS) framework with view sharing to
accelerate Dynamic Contrast Enhanced Magnetic Resonance Imaging (DCEMRI). A
novel method to combine k-spaces of different regions (Temporal Region (TR) and
Spatial Region (SR)) is carried out in this work. View sharing is adapted to
combine the kspace, by mapping samples from SR region frames onto corresponding
frames in TR region to improve the edge information, achieving better reconstruction
with higher acceleration. It is shown that the proposed method provides better Pharmacokinetic(PK) maps at higher acceleration rates than existing methods with minimum error,
as qualified by NRMSE values.Purpose
The
purpose of this study is to achieve better reconstruction of Dynamic Contrast
Enhanced Magnetic Resonance Imaging (DCEMRI) with higher acceleration and to obtain better Pharmacokinetic (PK)
modelling results at these higher acceleration factors retaining the quality of
image.
Methods
In the proposed
work, the algorithm is tested on in-vivo data instead on phantom data as in 1. Also, the acceleration factors are increased to 8X/6X to
increase the acceleration by a factor of 2 in both Temporal Resolution (TR) and
Spatial Resolution (SR) regions (shown in figure 1) taking different
undersampling masks in both regions, thus resulting in different accelerations
and undersampling in both these regions. The method includes view-sharing that
is done by mapping the samples from SR region onto TR region at corresponding
frames in both regions. The mapping of samples is done such that there will not
be any occurrence of scaling errors. For eg: the samples from first frame in SR
region are mapped onto the last frame of TR region. Mapping is performed by taking the high
frequency samples of frame in SR region onto corresponding frame in TR region
to improve the high frequency information in reconstructed frames. Reconstruction is performed or 8X/6X and
6X/4X accelerations respectively. The reconstructed images are fed into Tofts
model 2 to obtain the parametric
maps.
Data: All experiments were performed
using breast DCE data sets downloaded from Quantitative Imaging Network (QIN) 3 with parameters TR=6.2 ms, TE=2.9ms, temporal resolution 18~20
seconds. Number of time points varied from 28~32 frames in each data sets. The Contrast
Agent (CA) used was Gd (HP-DO3A)
[ProHance] IV with a dosage of 0.1mmol/Kg at 2 ml/s. The reconstruction of this
in-vivo data was performed by taking combination of different acceleration
factors in TR and SR regions respectively.
Results
The proposed method shows better reconstruction results as
in figure 2. From figure 2, it can be inferred that the image obtained by
including view sharing (b) is better in terms of blurring than that of the one
with only CS (a). Thus, the acquisition is accelerated and the PK maps obtained
for the tumor region shown in figure 3 at these acceleration factors using
previous method (ASTRA)
1 and current method (RASTRA) are
as shown in figure 4. From figure 4 (Ktrans
values), we can observe that the reconstructed images obtained using
RASTRA are much closer to 1X maps compared to those of
ASTRA
1.
Conclusion and Discussion
Sampling method used in the proposed method RASTRA
is based on mapping which does not lead to temporal blurring on reconstruction
as the injection of CA affects change only in the low frequency data and not
affecting the high frequency information. RASTRA was able to reconstruct the
images at higher acceleration factors with high fidelity. On including view
sharing, we could obtain better edge information in reconstructed frames thus
improving the image quality and subsequently in the PK maps. The NRMSE value
obtained using RASTRA is less than that obtained using ASTRA as shown in figure
5 for all acceleration factors.
Acknowledgements
This work was supported by Department of Science and Technology (DST), Govt. of India under the program Technology Systems Development (TSD) for the project “Novel acquisition and reconstruction strategies to accelerate magnetic resonance imaging using compressed sensing”, No: DST/TSG/NTS/2013/100-G.References
[1] Rashmi Reddy , Shasmshia
Tabassum , Shaikh Imam , Nithin N Vajuvalli , Sowmya Ramachandra and Sairam Geethanath. Adaptive
spatio-temporal resolution for accelerated (ASTRA) DCEMRI driven by
pharmacokinetic modeling. Proc. Intl. Soc. Mag. Reson. Med. 22 (2014)
[2] Steven P. Sourbron
and David L. Buckley. On the scope and interpretation of the Tofts
models for DCE-MRI. 1002/mrm.22861, 735–745
[3] DCE-MRI Clinical Data.
http://michallenges.org/dceChallenge2/clinical.html